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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG30019-RB through 18771 annotations produced 1 hits



/// (CG11919 /// CG18003):

Annotation Number : CG30019
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033564 /// FBgn0061356
Gbrowse : chr2R:6767495-6772397 (+) // 100.0 //
Probeset : 1634699_a_at
Accessions : protein= NP_001027401; /// NP_001027402; /// NP_001027403; /// NP_001163114; /// NP_001163115;, nucleotide= NM_001032230; /// NM_001032231; /// NM_001032232; /// NM_001169643; /// NM_001169644;
Pathway : 0005777 // peroxisome // inferred from sequence or structural similarity
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from
FlyMine data for FBgn0033564 /// FBgn0061356.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain15 24 of 4 0.10Down
Head376 294 of 4 3.10Up
Eye154 414 of 4 1.28None
Thoracicoabdominal ganglion11 11 of 4 0.10Down
Salivary gland4 10 of 4 0.04Down
Crop7 20 of 4 0.10Down
Midgut1 00 of 4 0.00Down
Tubule2653 1594 of 422.10Up
Hindgut58 54 of 4 0.50Down
Heart172 254 of 4 1.43None
Fat body285 594 of 4 2.38Up
Ovary0 00 of 4 0.00Down
Testis4 10 of 4 0.00Down
Male accessory glands3 10 of 4 0.00Down
Virgin spermatheca1246 664 of 410.38Up
Mated spermatheca483 634 of 4 4.03Up
Adult carcass300 194 of 4 2.50Up
Larval CNS1 00 of 4 0.02Down
Larval Salivary gland6 30 of 4 0.06Down
Larval midgut0 00 of 4 0.01Down
Larval tubule1606 894 of 413.40Up
Larval hindgut25 42 of 4 0.21Down
Larval fat body1390 1654 of 411.60Up
Larval trachea9 101 of 4 0.08Down
Larval carcass3 00 of 4 0.03Down
S2 cells (growing)2 00 of 4 0.02Down
Whole fly120 44 of 4

Looking for CG30019-RB. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime