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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG30020-RB through 18771 annotations produced 1 hits



(CG30020):

Annotation Number : CG30020
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0050020
Gbrowse : chr2R:6774319-6780292 (+) // 100.0 //
Probeset : 1634691_a_at
Accessions : protein= NP_610627;, nucleotide= NM_136783;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from sequence or stru
Interpro : 0003676 // nucleic acid binding // inferred from sequence or structural similarity /// 0003676 // nucleic acid binding /
FlyMine data for FBgn0050020.
Homophila reports that CG30020 is a close match (6e-11) to human gene GFI1;ZNF163 (NP_005254), a gene associated with Neutropenia, nonimmune chronic idiopathic, of adults, 607847 (3);Neutropenia, severe congenital, 202700 (3).
TRiP has 1 RNAi stocks for FBgn0050020 available for purchase.
VDRC has 1 RNAi stocks for FBgn0050020 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain91 ± 24 of 4 1.00None
Head35 ± 14 of 4 0.40Down
Eye35 ± 64 of 4 0.38Down
Thoracicoabdominal ganglion45 ± 34 of 4 0.50Down
Salivary gland80 ± 44 of 4 0.87None
Crop53 ± 14 of 4 0.60Down
Midgut32 ± 44 of 4 0.40Down
Tubule37 ± 14 of 4 0.40Down
Hindgut36 ± 24 of 4 0.40Down
Heart22 ± 14 of 4 0.25Down
Fat body25 ± 34 of 4 0.28Down
Ovary241 ± 94 of 4 2.60Up
Testis48 ± 54 of 4 0.50Down
Male accessory glands59 ± 44 of 4 0.60Down
Virgin spermatheca24 ± 24 of 4 0.26Down
Mated spermatheca25 ± 14 of 4 0.27Down
Adult carcass37 ± 54 of 4 0.40Down
Larval CNS169 ± 104 of 4 1.83Up
Larval Salivary gland80 ± 34 of 4 0.87None
Larval midgut28 ± 14 of 4 0.31Down
Larval tubule33 ± 24 of 4 0.40Down
Larval hindgut36 ± 14 of 4 0.40Down
Larval fat body38 ± 84 of 4 0.40Down
Larval trachea59 ± 84 of 4 0.65Down
Larval carcass43 ± 24 of 4 0.47Down
S2 cells (growing)161 ± 34 of 4 1.74Up
Whole fly92 ± 74 of 4

Looking for CG30020-RB. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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