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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG30043-RA through 18771 annotations produced 1 hits



(CG30043):

Annotation Number : CG30043
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0050043
Gbrowse : chr2R:8246957-8250670 (+) // 100.0 //
Probeset : 1633790_at
Accessions : protein= NP_725143;, nucleotide= NM_165889;
Interpro : 0008233 // peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from
FlyMine data for FBgn0050043.
BDGP gene expression has embryonic in situ data for CG30043: 12 pix of staining in 5 body parts.
VDRC has 2 RNAi stocks for FBgn0050043 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.00Down
Head2 ± 10 of 4 0.00Down
Eye1 ± 00 of 4 0.02Down
Thoracicoabdominal ganglion1 ± 00 of 4 0.00Down
Salivary gland5 ± 20 of 4 0.07Down
Crop3 ± 10 of 4 0.00Down
Midgut602 ± 364 of 4 7.70Up
Tubule9 ± 41 of 4 0.10Down
Hindgut270 ± 224 of 4 3.50Up
Heart1 ± 10 of 4 0.02Down
Fat body2 ± 10 of 4 0.04Down
Ovary1 ± 00 of 4 0.00Down
Testis2 ± 00 of 4 0.00Down
Male accessory glands4 ± 20 of 4 0.10Down
Virgin spermatheca1 ± 00 of 4 0.02Down
Mated spermatheca2 ± 11 of 4 0.03Down
Adult carcass4 ± 20 of 4 0.10Down
Larval CNS1 ± 10 of 4 0.02Down
Larval Salivary gland1 ± 00 of 4 0.02Down
Larval midgut1822 ± 1424 of 423.31Up
Larval tubule49 ± 54 of 4 0.60Down
Larval hindgut128 ± 264 of 4 1.64None
Larval fat body5 ± 10 of 4 0.10Down
Larval trachea0 ± 00 of 4 0.01Down
Larval carcass2 ± 10 of 4 0.03Down
S2 cells (growing)2 ± 00 of 4 0.03Down
Whole fly78 ± 84 of 4

Looking for CG30043-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime