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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG30045-RA through 18771 annotations produced 1 hits



():

Annotation Number : CG30045
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID :
Gbrowse : chr2R:8263615-8265735 (+) // 100.0 //
Probeset : 1624498_at
Accessions : protein= NP_001097285;, nucleotide= NM_001103815;
Interpro : 0005214 // structural constituent of chitin-based cuticle // inferred from sequence or structural similarity


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.70None
Head6 ± 20 of 4 4.50None
Eye4 ± 00 of 4 3.32Up
Thoracicoabdominal ganglion2 ± 10 of 4 1.40None
Salivary gland11 ± 30 of 4 7.57None
Crop4 ± 10 of 4 3.20None
Midgut1 ± 00 of 4 1.00None
Tubule1 ± 00 of 4 0.90None
Hindgut2 ± 00 of 4 1.60None
Heart2 ± 10 of 4 1.65None
Fat body10 ± 51 of 4 6.80Up
Ovary0 ± 00 of 4 0.50None
Testis1 ± 00 of 4 0.70None
Male accessory glands5 ± 00 of 4 3.80Up
Virgin spermatheca5 ± 10 of 4 3.53Up
Mated spermatheca4 ± 20 of 4 2.82None
Adult carcass9 ± 30 of 4 6.00None
Larval CNS1 ± 10 of 4 0.78None
Larval Salivary gland1 ± 00 of 4 1.20None
Larval midgut3 ± 10 of 4 2.60None
Larval tubule0 ± 00 of 4 0.50None
Larval hindgut2 ± 00 of 4 1.85None
Larval fat body2 ± 10 of 4 1.90None
Larval trachea5 ± 30 of 4 3.83None
Larval carcass2 ± 00 of 4 1.37None
S2 cells (growing)1 ± 10 of 4 1.23None
Whole fly1 ± 10 of 4

Looking for CG30045-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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