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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG30046-RB through 18771 annotations produced 1 hits



(CG30046):

Annotation Number : CG30046
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0050046
Gbrowse : chr2R:8201623-8204736 (+) // 100.0 //
Probeset : 1628232_at
Accessions : protein= NP_725129;, nucleotide= NM_165878;
FlyMine data for FBgn0050046.
BDGP gene expression has embryonic in situ data for CG30046: 2 pix of staining in 1 body parts.
TRiP has 1 RNAi stocks for FBgn0050046 available for purchase.
VDRC has 3 RNAi stocks for FBgn0050046 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain9 ± 14 of 4 0.50Down
Head53 ± 34 of 4 2.60Up
Eye25 ± 34 of 4 1.23None
Thoracicoabdominal ganglion5 ± 11 of 4 0.30Down
Salivary gland3 ± 10 of 4 0.17Down
Crop3 ± 00 of 4 0.20Down
Midgut2 ± 00 of 4 0.10Down
Tubule3 ± 00 of 4 0.20Down
Hindgut5 ± 00 of 4 0.30Down
Heart85 ± 44 of 4 4.13Up
Fat body90 ± 94 of 4 4.39Up
Ovary14 ± 24 of 4 0.70None
Testis1 ± 00 of 4 0.10Down
Male accessory glands1 ± 00 of 4 0.10Down
Virgin spermatheca65 ± 44 of 4 3.19Up
Mated spermatheca45 ± 34 of 4 2.20Up
Adult carcass63 ± 44 of 4 3.10Up
Larval CNS3 ± 11 of 4 0.19Down
Larval Salivary gland7 ± 21 of 4 0.37Down
Larval midgut5 ± 20 of 4 0.28Down
Larval tubule19 ± 33 of 4 0.90None
Larval hindgut9 ± 13 of 4 0.48Down
Larval fat body273 ± 104 of 413.20Up
Larval trachea5 ± 21 of 4 0.25Down
Larval carcass19 ± 14 of 4 0.93None
S2 cells (growing)283 ± 34 of 413.69Up
Whole fly20 ± 14 of 4

Looking for CG30046-RB. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime