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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG30055-RA through 18771 annotations produced 1 hits



(CR30055):

Annotation Number : CG30055
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0050055
Gbrowse : chr2R:8476807-8478216 (+) // 100.0 //
Probeset : 1629821_at
Accessions : protein= NP_725190;, nucleotide= NM_165918;
FlyMine data for FBgn0050055.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain190 ± 24 of 4 1.40Up
Head131 ± 84 of 4 0.90None
Eye212 ± 44 of 4 1.53Up
Thoracicoabdominal ganglion122 ± 14 of 4 0.90None
Salivary gland100 ± 34 of 4 0.72Down
Crop169 ± 54 of 4 1.20Up
Midgut87 ± 54 of 4 0.60Down
Tubule66 ± 34 of 4 0.50Down
Hindgut138 ± 24 of 4 1.00None
Heart117 ± 74 of 4 0.85None
Fat body101 ± 114 of 4 0.73Down
Ovary315 ± 34 of 4 2.30Up
Testis14 ± 10 of 4 0.10Down
Male accessory glands210 ± 94 of 4 1.50Up
Virgin spermatheca66 ± 14 of 4 0.48Down
Mated spermatheca69 ± 64 of 4 0.50Down
Adult carcass119 ± 24 of 4 0.90None
Larval CNS56 ± 74 of 4 0.40Down
Larval Salivary gland35 ± 24 of 4 0.26Down
Larval midgut35 ± 31 of 4 0.25Down
Larval tubule31 ± 04 of 4 0.20Down
Larval hindgut55 ± 34 of 4 0.40Down
Larval fat body23 ± 21 of 4 0.20Down
Larval trachea125 ± 144 of 4 0.90None
Larval carcass58 ± 24 of 4 0.42Down
S2 cells (growing)52 ± 14 of 4 0.38Down
Whole fly139 ± 74 of 4

Looking for CG30055-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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