FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG30062-RA through 18771 annotations produced 1 hits

(CG30062):

Annotation Number : CG30062
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0050062
Gbrowse : chr2R:9333221-9333843 (-) // 100.0 //
Probeset : 1628508_at
Accessions : protein= NP_725299;, nucleotide= NM_165992;
Interpro : "0003796 // lysozyme activity // inferred from sequence or structural similarity /// 0003796 // lysozyme activity // inf
FlyMine data for FBgn0050062.
Homophila reports that CG30062 is a close match (4e-15) to human gene LYZ (NP_000230), a gene associated with Amyloidosis, renal, 105200 (3).
VDRC has 2 RNAi stocks for FBgn0050062 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	1 ± 0	0 of 4	0.60	None
Head	10 ± 1	3 of 4	4.70	Up
Eye	8 ± 1	3 of 4	3.63	Up
Thoracicoabdominal ganglion	2 ± 0	0 of 4	0.90	None
Salivary gland	7 ± 3	0 of 4	3.16	None
Crop	5 ± 1	0 of 4	2.30	None
Midgut	1 ± 0	0 of 4	0.60	None
Tubule	1 ± 0	0 of 4	0.60	Down
Hindgut	4 ± 0	0 of 4	1.80	None
Heart	3 ± 0	1 of 4	1.52	None
Fat body	4 ± 2	0 of 4	1.91	None
Ovary	0 ± 0	0 of 4	0.30	None
Testis	1 ± 0	0 of 4	0.80	None
Male accessory glands	2 ± 0	0 of 4	0.90	None
Virgin spermatheca	2 ± 0	0 of 4	0.87	None
Mated spermatheca	4 ± 1	0 of 4	1.77	None
Adult carcass	20 ± 0	0 of 4	9.00	Up
Larval CNS	2 ± 1	0 of 4	0.98	None
Larval Salivary gland	4 ± 1	0 of 4	1.74	None
Larval midgut	1 ± 0	0 of 4	0.77	None
Larval tubule	3 ± 0	0 of 4	1.30	None
Larval hindgut	2 ± 1	0 of 4	1.13	None
Larval fat body	3 ± 1	0 of 4	1.70	None
Larval trachea	5 ± 3	0 of 4	2.32	None
Larval carcass	3 ± 1	0 of 4	1.37	None
S2 cells (growing)	6 ± 1	0 of 4	3.01	Up
Whole fly	2 ± 0	0 of 4

Looking for CG30062-RA. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720