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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG3009-RA through 18771 annotations produced 1 hits



(CG3009):

Annotation Number : CG3009
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0029720
Gbrowse : chrX:4552184-4560730 (-) // 100.0 //
Probeset : 1627406_at
Accessions : protein= NP_001162665; /// NP_001162666; /// NP_572180;, nucleotide= NM_001169194; /// NM_001169195; /// NM_131952;
Pathway : 0005576 // extracellular region // inferred from electronic annotation
Interpro : 0004623 // phospholipase A2 activity // inferred from sequence or structural similarity /// 0004623 // phospholipase A2
FlyMine data for FBgn0029720.
TRiP has 1 RNAi stocks for FBgn0029720 available for purchase.
VDRC has 1 RNAi stocks for FBgn0029720 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain534 214 of 424.00Up
Head113 64 of 4 5.10Up
Eye46 34 of 4 2.09Up
Thoracicoabdominal ganglion567 334 of 425.50Up
Salivary gland8 30 of 4 0.37Down
Crop52 54 of 4 2.30Up
Midgut9 22 of 4 0.40Down
Tubule6 00 of 4 0.30Down
Hindgut17 24 of 4 0.80None
Heart1 00 of 4 0.06Down
Fat body5 42 of 4 0.26Down
Ovary3 00 of 4 0.20Down
Testis2 00 of 4 0.10Down
Male accessory glands4 20 of 4 0.20Down
Virgin spermatheca3 10 of 4 0.16Down
Mated spermatheca4 11 of 4 0.20Down
Adult carcass14 32 of 4 0.60None
Larval CNS77 134 of 4 3.48Up
Larval Salivary gland7 12 of 4 0.34Down
Larval midgut6 11 of 4 0.29Down
Larval tubule24 24 of 4 1.10None
Larval hindgut36 24 of 4 1.66Up
Larval fat body6 10 of 4 0.30Down
Larval trachea25 64 of 4 1.15None
Larval carcass12 14 of 4 0.58None
S2 cells (growing)3 00 of 4 0.16Down
Whole fly22 34 of 4

Looking for CG3009-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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