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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG30093-RA through 18771 annotations produced 1 hits



Cytochrome c oxidase Polypeptide VIA (CG30093):

Annotation Number : CG30093
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0050093
Gbrowse : chr2R:11831616-11831998 (+) // 100.0 //
Probeset : 1639960_at
Accessions : protein= NP_725504;, nucleotide= NM_166124;
Pathway : 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0005751 // mitochondrial respiratory
Interpro : 0004129 // cytochrome-c oxidase activity // inferred from sequence or structural similarity /// 0004129 // cytochrome-c
FlyMine data for FBgn0050093.
VDRC has 2 RNAi stocks for FBgn0050093 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain6 ± 21 of 4 0.10Down
Head7 ± 21 of 4 0.10Down
Eye5 ± 10 of 4 0.06Down
Thoracicoabdominal ganglion6 ± 00 of 4 0.10Down
Salivary gland12 ± 10 of 4 0.13Down
Crop34 ± 24 of 4 0.40Down
Midgut11 ± 02 of 4 0.10Down
Tubule5 ± 00 of 4 0.10Down
Hindgut38 ± 54 of 4 0.40Down
Heart6 ± 01 of 4 0.07Down
Fat body12 ± 61 of 4 0.14Down
Ovary2 ± 10 of 4 0.00Down
Testis1206 ± 294 of 413.40Up
Male accessory glands4 ± 10 of 4 0.10Down
Virgin spermatheca9 ± 00 of 4 0.10Down
Mated spermatheca7 ± 20 of 4 0.09Down
Adult carcass19 ± 41 of 4 0.20Down
Larval CNS4 ± 00 of 4 0.05Down
Larval Salivary gland2 ± 00 of 4 0.02Down
Larval midgut10 ± 12 of 4 0.12Down
Larval tubule3 ± 10 of 4 0.00Down
Larval hindgut16 ± 24 of 4 0.18Down
Larval fat body75 ± 364 of 4 0.80None
Larval trachea9 ± 53 of 4 0.10Down
Larval carcass7 ± 11 of 4 0.08Down
S2 cells (growing)4 ± 00 of 4 0.05Down
Whole fly90 ± 44 of 4

Looking for CG30093-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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