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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG30097-RF through 18771 annotations produced 2 hits



Menl-2 (Menl-2):

Annotation Number : CG30097
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0029153
Gbrowse : chr2R:12302498-12304643 (-) // 100.0 //
Probeset : 1628440_at
Accessions : protein= NP_001027423; /// NP_001027424; /// NP_001027425; /// NP_001163167;, nucleotide= NM_001032252; /// NM_001032253; /// NM_001032254; /// NM_001169696;
Interpro : "0003824 // catalytic activity // inferred from electronic annotation /// 0004470 // malic enzyme activity // inferred f
FlyMine data for FBgn0029153.
VDRC has 1 RNAi stocks for FBgn0029153 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 00 of 4 1.20None
Head2 ± 00 of 4 1.00None
Eye4 ± 00 of 4 1.53None
Thoracicoabdominal ganglion2 ± 10 of 4 0.70None
Salivary gland10 ± 11 of 4 3.81Up
Crop2 ± 00 of 4 1.10None
Midgut5 ± 10 of 4 1.90None
Tubule3 ± 00 of 4 1.40Up
Hindgut4 ± 10 of 4 1.60None
Heart1 ± 00 of 4 0.48None
Fat body6 ± 40 of 4 2.29None
Ovary1 ± 00 of 4 0.60None
Testis6 ± 00 of 4 2.40Up
Male accessory glands2 ± 00 of 4 0.80None
Virgin spermatheca3 ± 10 of 4 1.40None
Mated spermatheca4 ± 10 of 4 1.53None
Adult carcass5 ± 31 of 4 2.20None
Larval CNS2 ± 10 of 4 0.96None
Larval Salivary gland7 ± 10 of 4 2.85Up
Larval midgut3 ± 10 of 4 1.39None
Larval tubule3 ± 10 of 4 1.20None
Larval hindgut1 ± 00 of 4 0.69None
Larval fat body5 ± 20 of 4 2.00None
Larval trachea1 ± 00 of 4 0.60None
Larval carcass1 ± 00 of 4 0.61None
S2 cells (growing)2 ± 00 of 4 0.75None
Whole fly2 ± 00 of 4



Menl-1 /// Menl-2 (Menl-1 /// Menl-2):

Annotation Number : CG30097
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0029153 /// FBgn0029154
Gbrowse : chr2R:12302498-12304643 (-) // 100.0 //
Probeset : 1626396_s_at
Accessions : protein= NP_001027423; /// NP_001027424; /// NP_001027425; /// NP_001027426; /// NP_001027427; /// NP_001027428; /// NP_001163167;, nucleotide= NM_001032252; /// NM_001032253; /// NM_001032254; /// NM_001032255; /// NM_001032256; /// NM_001032257; /// NM_001169696;
Pathway : 0005739 // mitochondrion // inferred from sequence or structural similarity
Interpro : "0003824 // catalytic activity // inferred from electronic annotation /// 0004470 // malic enzyme activity // inferred f
FlyMine data for FBgn0029153 /// FBgn0029154.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.00Down
Head6 ± 10 of 4 0.10Down
Eye1 ± 00 of 4 0.01Down
Thoracicoabdominal ganglion2 ± 00 of 4 0.00Down
Salivary gland8 ± 40 of 4 0.08Down
Crop1 ± 00 of 4 0.00Down
Midgut4 ± 20 of 4 0.00Down
Tubule2 ± 00 of 4 0.00Down
Hindgut3 ± 10 of 4 0.00Down
Heart2 ± 10 of 4 0.03Down
Fat body3 ± 20 of 4 0.03Down
Ovary0 ± 00 of 4 0.00Down
Testis1095 ± 454 of 410.40Up
Male accessory glands1 ± 00 of 4 0.00Down
Virgin spermatheca3 ± 10 of 4 0.04Down
Mated spermatheca1 ± 00 of 4 0.02Down
Adult carcass5 ± 30 of 4 0.10Down
Larval CNS0 ± 00 of 4 0.01Down
Larval Salivary gland1 ± 00 of 4 0.01Down
Larval midgut4 ± 10 of 4 0.04Down
Larval tubule1 ± 00 of 4 0.00Down
Larval hindgut1 ± 00 of 4 0.01Down
Larval fat body117 ± 604 of 4 1.10None
Larval trachea3 ± 20 of 4 0.03Down
Larval carcass2 ± 00 of 4 0.03Down
S2 cells (growing)1 ± 00 of 4 0.01Down
Whole fly104 ± 54 of 4

Looking for CG30097-RF. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime