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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG30098-RA through 18771 annotations produced 1 hits



(CG30098):

Annotation Number : CG30098
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0050098
Gbrowse : chr2R:12241742-12242141 (-) // 100.0 //
Probeset : 1637120_at
Accessions : protein= NP_725573;, nucleotide= NM_166171;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity /
FlyMine data for FBgn0050098.
Homophila reports that CG30098 is a close match (4e-11) to human gene MTSP1;ST14 (NP_068813), a gene associated with Ichthyosis with hypotrichosis, 610765 (3).
VDRC has 1 RNAi stocks for FBgn0050098 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 01 of 4 0.50None
Head39 64 of 4 6.20Up
Eye9 11 of 4 1.47None
Thoracicoabdominal ganglion6 00 of 4 1.00None
Salivary gland3 10 of 4 0.47None
Crop2 00 of 4 0.40None
Midgut1 00 of 4 0.30None
Tubule3 00 of 4 0.60Down
Hindgut3 10 of 4 0.60None
Heart24 33 of 4 3.84Up
Fat body19 51 of 4 3.13Up
Ovary1 00 of 4 0.30None
Testis1 00 of 4 0.20None
Male accessory glands2 10 of 4 0.40None
Virgin spermatheca183 524 of 429.16Up
Mated spermatheca55 124 of 4 8.85Up
Adult carcass33 13 of 4 5.30Up
Larval CNS1 10 of 4 0.21None
Larval Salivary gland3 10 of 4 0.49None
Larval midgut1 00 of 4 0.21None
Larval tubule6 20 of 4 1.00None
Larval hindgut0 00 of 4 0.13None
Larval fat body25 03 of 4 4.00Up
Larval trachea2 10 of 4 0.33None
Larval carcass4 10 of 4 0.69None
S2 cells (growing)0 00 of 4 0.10None
Whole fly6 31 of 4

Looking for CG30098-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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