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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG30103-RA through 18771 annotations produced 1 hits



(CG30103):

Annotation Number : CG30103
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0050103
Gbrowse : chr2R:13381266-13383316 (+) // 100.0 //
Probeset : 1624630_at
Accessions : protein= NP_725682;, nucleotide= NM_166233;
Interpro : 0016787 // hydrolase activity // inferred from electronic annotation
FlyMine data for FBgn0050103.
VDRC has 3 RNAi stocks for FBgn0050103 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.00Down
Head2 ± 10 of 4 0.10Down
Eye1 ± 00 of 4 0.07Down
Thoracicoabdominal ganglion2 ± 10 of 4 0.10Down
Salivary gland8 ± 20 of 4 0.39Down
Crop3 ± 10 of 4 0.20Down
Midgut4 ± 10 of 4 0.20Down
Tubule1 ± 00 of 4 0.10Down
Hindgut0 ± 00 of 4 0.00Down
Heart1 ± 00 of 4 0.09Down
Fat body1 ± 00 of 4 0.05Down
Ovary1 ± 00 of 4 0.10Down
Testis274 ± 114 of 412.70Up
Male accessory glands7 ± 30 of 4 0.30Down
Virgin spermatheca0 ± 00 of 4 0.02Down
Mated spermatheca0 ± 00 of 4 0.03Down
Adult carcass3 ± 10 of 4 0.10Down
Larval CNS1 ± 10 of 4 0.06Down
Larval Salivary gland1 ± 00 of 4 0.08Down
Larval midgut3 ± 10 of 4 0.16Down
Larval tubule4 ± 20 of 4 0.20Down
Larval hindgut2 ± 10 of 4 0.13Down
Larval fat body36 ± 172 of 4 1.70None
Larval trachea2 ± 10 of 4 0.09Down
Larval carcass2 ± 10 of 4 0.12Down
S2 cells (growing)1 ± 00 of 4 0.06Down
Whole fly21 ± 24 of 4

Looking for CG30103-RA. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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