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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG30104-RB through 18771 annotations produced 1 hits



(CG30104):

Annotation Number : CG30104
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0050104
Gbrowse : chr2R:13372501-13380680 (+) // 100.0 //
Probeset : 1623241_s_at
Accessions : protein= NP_611218; /// NP_725681;, nucleotide= NM_137374; /// NM_166232;
Interpro : "0000166 // nucleotide binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from
FlyMine data for FBgn0050104.
BDGP gene expression has embryonic in situ data for CG30104: 4 pix of staining in 1 body parts.
VDRC has 3 RNAi stocks for FBgn0050104 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain46 24 of 4 0.30Down
Head131 54 of 4 0.80None
Eye73 84 of 4 0.45Down
Thoracicoabdominal ganglion54 34 of 4 0.30Down
Salivary gland1798 674 of 411.01Up
Crop43 14 of 4 0.30Down
Midgut187 104 of 4 1.10None
Tubule2871 974 of 417.60Up
Hindgut122 94 of 4 0.80None
Heart104 34 of 4 0.64Down
Fat body115 234 of 4 0.71None
Ovary37 44 of 4 0.20Down
Testis505 144 of 4 3.10Up
Male accessory glands110 34 of 4 0.70None
Virgin spermatheca37 34 of 4 0.23Down
Mated spermatheca44 34 of 4 0.27Down
Adult carcass118 124 of 4 0.70None
Larval CNS138 124 of 4 0.85None
Larval Salivary gland2103 2904 of 412.88Up
Larval midgut94 294 of 4 0.58None
Larval tubule710 194 of 4 4.30Up
Larval hindgut163 414 of 4 1.00None
Larval fat body314 334 of 4 1.90Up
Larval trachea43 124 of 4 0.27Down
Larval carcass177 474 of 4 1.08None
S2 cells (growing)99 44 of 4 0.61Down
Whole fly163 174 of 4

Looking for CG30104-RB. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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