Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG30106-RA through 18771 annotations produced 1 hits



(CG30106):

Annotation Number : CG30106
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0050106
Gbrowse : chr2R:13535036-13541801 (-) // 100.0 //
Probeset : 1628222_at
Accessions : protein= NP_611241;, nucleotide= NM_137397;
Pathway : 0016021 // integral to membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred f
Interpro : 0004872 // receptor activity // inferred from electronic annotation /// 0004946 // bombesin receptor activity // inferre
FlyMine data for FBgn0050106.
Homophila reports that CG30106 is a close match (9e-11) to human gene HTR2A (NP_000612), a gene associated with {Alcohol dependence, susceptibility to}, 103780 (3);{Anorexia nervosa, susceptibility to}, 606788 (3);{Major depressive disorder, response to citalopram therapy in}, 608516 (3);{Obsessive-compulsive disorder, susceptibility to}, 164230 (3);{Schizophrenia, susceptibility to}, 181500 (3);{Seasonal affective disorder, susceptibility to}, 608516 (3).
TRiP has 1 RNAi stocks for FBgn0050106 available for purchase.
VDRC has 2 RNAi stocks for FBgn0050106 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain14 10 of 4 2.00Up
Head8 30 of 4 1.10None
Eye1 00 of 4 0.22Down
Thoracicoabdominal ganglion21 11 of 4 2.90Up
Salivary gland4 20 of 4 0.69None
Crop9 10 of 4 1.30None
Midgut10 10 of 4 1.50None
Tubule2 00 of 4 0.30Down
Hindgut36 14 of 4 5.20Up
Heart14 13 of 4 2.01Up
Fat body5 10 of 4 0.73None
Ovary2 00 of 4 0.30None
Testis8 10 of 4 1.30None
Male accessory glands18 00 of 4 2.60Up
Virgin spermatheca4 20 of 4 0.62None
Mated spermatheca5 10 of 4 0.80None
Adult carcass5 20 of 4 0.80None
Larval CNS7 10 of 4 1.12None
Larval Salivary gland5 30 of 4 0.76None
Larval midgut4 20 of 4 0.69None
Larval tubule1 00 of 4 0.30None
Larval hindgut10 10 of 4 1.41None
Larval fat body9 40 of 4 1.40None
Larval trachea1 10 of 4 0.21Down
Larval carcass4 10 of 4 0.65None
S2 cells (growing)5 10 of 4 0.79None
Whole fly7 10 of 4

Looking for CG30106-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime