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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG3011-RA through 18771 annotations produced 1 hits



/// (CG3011 /// DsecCG3011):

Annotation Number : CG3011
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0029823
Gbrowse : chrX:5807098-5810826 (-) // 100.0 //
Probeset : 1640594_at
Accessions : protein= NP_001138162; /// NP_572278;, nucleotide= NM_001144690; /// NM_132050;
Pathway : 0005739 // mitochondrion // inferred from sequence or structural similarity
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004372 // glycine hydroxymethyltransferase act
FlyMine data for FBgn0029823.
BDGP gene expression has embryonic in situ data for CG3011: 23 pix of staining in 8 body parts.
BioGrid reports that CG3011 interacts with CG32086 CG32491 .
VDRC has 2 RNAi stocks for FBgn0029823 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain215 84 of 4 0.40Down
Head883 214 of 4 1.60Up
Eye366 504 of 4 0.66Down
Thoracicoabdominal ganglion245 104 of 4 0.40Down
Salivary gland215 164 of 4 0.39Down
Crop586 354 of 4 1.10None
Midgut197 124 of 4 0.40Down
Tubule266 164 of 4 0.50Down
Hindgut244 54 of 4 0.40Down
Heart902 474 of 4 1.62Up
Fat body1336 2074 of 4 2.40Up
Ovary594 54 of 4 1.10None
Testis71 50 of 4 0.10Down
Male accessory glands1270 864 of 4 2.30Up
Virgin spermatheca1537 1674 of 4 2.76Up
Mated spermatheca1038 1814 of 4 1.87None
Adult carcass925 444 of 4 1.70Up
Larval CNS414 214 of 4 0.75None
Larval Salivary gland380 344 of 4 0.68Down
Larval midgut618 674 of 4 1.11None
Larval tubule646 354 of 4 1.20None
Larval hindgut586 404 of 4 1.05None
Larval fat body4732 4984 of 4 8.50Up
Larval trachea634 1364 of 4 1.14None
Larval carcass774 1044 of 4 1.39None
S2 cells (growing)894 144 of 4 1.61Up
Whole fly556 554 of 4

Looking for CG3011-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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