FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG30115-RD through 18771 annotations produced 1 hits

(CG30115):

Annotation Number : CG30115
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0050115
Gbrowse : chr2R:14441699-14449140 (-) // 100.0 //
Probeset : 1631764_a_at
Accessions : protein= NP_788403;, nucleotide= NM_176223;
Pathway : 0005622 // intracellular // inferred from electronic annotation
Interpro : 0005085 // guanyl-nucleotide exchange factor activity // inferred from sequence or structural similarity /// 0005089 //
FlyMine data for FBgn0050115.
BDGP gene expression has embryonic in situ data for CG30115: 7 pix of staining in 3 body parts.
Homophila reports that CG30115 is a close match (2e-15) to human gene (NP_003938), a gene associated with .
BioGrid reports that CG30115 interacts with CG6707 CG9911 CG31672 CG4699 CG4863 CG4936 CG5862 CG6226 CG6998 CG8860 CG8871 CG7977 Dmel CG32885 .
TRiP has 1 RNAi stocks for FBgn0050115 available for purchase.
VDRC has 2 RNAi stocks for FBgn0050115 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	42 ± 2	4 of 4	1.70	Up
Head	24 ± 3	4 of 4	1.00	None
Eye	28 ± 3	4 of 4	1.15	None
Thoracicoabdominal ganglion	40 ± 1	4 of 4	1.60	Up
Salivary gland	64 ± 3	4 of 4	2.58	Up
Crop	32 ± 4	4 of 4	1.30	None
Midgut	130 ± 4	4 of 4	5.20	Up
Tubule	66 ± 1	4 of 4	2.70	Up
Hindgut	48 ± 2	4 of 4	1.90	Up
Heart	12 ± 1	4 of 4	0.50	Down
Fat body	14 ± 2	2 of 4	0.57	Down
Ovary	7 ± 2	2 of 4	0.30	Down
Testis	18 ± 2	4 of 4	0.70	None
Male accessory glands	59 ± 5	4 of 4	2.40	Up
Virgin spermatheca	15 ± 1	4 of 4	0.64	Down
Mated spermatheca	15 ± 1	4 of 4	0.64	Down
Adult carcass	36 ± 3	4 of 4	1.50	Up
Larval CNS	26 ± 3	4 of 4	1.09	None
Larval Salivary gland	56 ± 4	4 of 4	2.26	Up
Larval midgut	128 ± 13	4 of 4	5.18	Up
Larval tubule	73 ± 3	4 of 4	2.90	Up
Larval hindgut	32 ± 4	4 of 4	1.31	None
Larval fat body	24 ± 3	3 of 4	1.00	None
Larval trachea	37 ± 4	4 of 4	1.49	Up
Larval carcass	33 ± 4	4 of 4	1.36	None
S2 cells (growing)	46 ± 2	4 of 4	1.88	Up
Whole fly	24 ± 1	4 of 4

Looking for CG30115-RD. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720