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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG30118-RA through 18771 annotations produced 1 hits



(CG30118):

Annotation Number : CG30118
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0050118
Gbrowse : chr2R:14318224-14327986 (-) // 99.83 //
Probeset : 1641326_at
Accessions : protein= NP_001097365; /// NP_001097366; /// NP_611333;, nucleotide= NM_001103895; /// NM_001103896; /// NM_137489;
Pathway : 0031533 // mRNA cap methyltransferase complex // inferred from electronic annotation
Interpro : 0004651 // polynucleotide 5'-phosphatase activity // inferred from electronic annotation /// 0005515 // protein binding
FlyMine data for FBgn0050118.
BDGP gene expression has embryonic in situ data for CG30118: 35 pix of staining in 34 body parts.
BioGrid reports that CG30118 interacts with CG4786 CG7231 .
VDRC has 1 RNAi stocks for FBgn0050118 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain384 94 of 4 3.60Up
Head218 184 of 4 2.00Up
Eye549 414 of 4 5.12Up
Thoracicoabdominal ganglion257 164 of 4 2.40Up
Salivary gland77 34 of 4 0.72Down
Crop133 34 of 4 1.20Up
Midgut122 64 of 4 1.10None
Tubule69 24 of 4 0.60Down
Hindgut283 74 of 4 2.60Up
Heart220 54 of 4 2.06Up
Fat body126 74 of 4 1.18None
Ovary94 34 of 4 0.90None
Testis56 34 of 4 0.50Down
Male accessory glands121 54 of 4 1.10None
Virgin spermatheca131 84 of 4 1.22None
Mated spermatheca126 44 of 4 1.17None
Adult carcass194 114 of 4 1.80Up
Larval CNS176 204 of 4 1.64Up
Larval Salivary gland112 94 of 4 1.05None
Larval midgut99 24 of 4 0.93None
Larval tubule259 174 of 4 2.40Up
Larval hindgut197 224 of 4 1.83Up
Larval fat body43 54 of 4 0.40Down
Larval trachea142 154 of 4 1.33Up
Larval carcass103 34 of 4 0.96None
S2 cells (growing)123 34 of 4 1.15None
Whole fly107 74 of 4

Looking for CG30118-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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