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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG30129-RA through 18771 annotations produced 1 hits



Odorant-binding protein 56b (Obp56b):

Annotation Number : CG30129
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0046880
Gbrowse : chr2R:15586346-15586822 (-) // 100.0 //
Probeset : 1635999_at
Accessions : protein= NP_611443;, nucleotide= NM_137599;
Interpro : 0005549 // odorant binding // not recorded /// 0005549 // odorant binding // inferred from sequence or structural simila
FlyMine data for FBgn0046880.
VDRC has 1 RNAi stocks for FBgn0046880 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.60None
Head10 ± 12 of 4 3.50Up
Eye4 ± 11 of 4 1.49None
Thoracicoabdominal ganglion4 ± 10 of 4 1.40None
Salivary gland4 ± 20 of 4 1.64None
Crop6 ± 00 of 4 2.10Up
Midgut8 ± 20 of 4 2.90None
Tubule6 ± 00 of 4 2.20Up
Hindgut5 ± 10 of 4 1.90None
Heart1 ± 00 of 4 0.65None
Fat body11 ± 30 of 4 3.82Up
Ovary4 ± 00 of 4 1.50None
Testis1 ± 00 of 4 0.40None
Male accessory glands4 ± 10 of 4 1.50None
Virgin spermatheca7 ± 11 of 4 2.62Up
Mated spermatheca10 ± 20 of 4 3.41None
Adult carcass9 ± 20 of 4 3.10None
Larval CNS3 ± 41 of 4 1.34None
Larval Salivary gland7 ± 20 of 4 2.51None
Larval midgut10 ± 21 of 4 3.52Up
Larval tubule6 ± 00 of 4 2.30Up
Larval hindgut5 ± 10 of 4 1.79None
Larval fat body5 ± 10 of 4 1.80None
Larval trachea4 ± 20 of 4 1.51None
Larval carcass11 ± 21 of 4 3.84Up
S2 cells (growing)5 ± 10 of 4 1.94None
Whole fly2 ± 00 of 4

Looking for CG30129-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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