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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG30152-RA through 18771 annotations produced 1 hits



/// /// /// GA15681 (CG30152 /// DafsCG30152 /// DmirCG10404 /// DpseGA15681):

Annotation Number : CG30152
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034543
Gbrowse : chr2R:16558707-16560059 (+) // 100.0 //
Probeset : 1629525_at
Accessions : protein= NP_611509;, nucleotide= NM_137665;
FlyMine data for FBgn0034543.
VDRC has 2 RNAi stocks for FBgn0034543 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain294 ± 94 of 4 1.00None
Head364 ± 134 of 4 1.30Up
Eye316 ± 104 of 4 1.10None
Thoracicoabdominal ganglion266 ± 74 of 4 0.90None
Salivary gland287 ± 104 of 4 1.00None
Crop320 ± 124 of 4 1.10None
Midgut644 ± 254 of 4 2.20Up
Tubule267 ± 114 of 4 0.90None
Hindgut381 ± 114 of 4 1.30Up
Heart1178 ± 614 of 4 4.08Up
Fat body479 ± 294 of 4 1.66Up
Ovary203 ± 54 of 4 0.70Down
Testis214 ± 44 of 4 0.70Down
Male accessory glands152 ± 24 of 4 0.50Down
Virgin spermatheca364 ± 164 of 4 1.26Up
Mated spermatheca271 ± 84 of 4 0.94None
Adult carcass593 ± 214 of 4 2.10Up
Larval CNS178 ± 84 of 4 0.62Down
Larval Salivary gland227 ± 104 of 4 0.79None
Larval midgut718 ± 134 of 4 2.49Up
Larval tubule527 ± 254 of 4 1.80Up
Larval hindgut239 ± 84 of 4 0.83None
Larval fat body3172 ± 4964 of 411.00Up
Larval trachea185 ± 244 of 4 0.64Down
Larval carcass242 ± 94 of 4 0.84None
S2 cells (growing)325 ± 34 of 4 1.13None
Whole fly288 ± 214 of 4

Looking for CG30152-RA. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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