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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG30159-RA through 18771 annotations produced 1 hits



(CG30159):

Annotation Number : CG30159
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0050159
Gbrowse : chr2R:2880625-2881813 (+) // 100.0 //
Probeset : 1637130_at
Accessions : protein= NP_001163069; /// NP_610254; /// NP_995768;, nucleotide= NM_001169598; /// NM_136410; /// NM_206046;
FlyMine data for FBgn0050159.
BDGP gene expression has embryonic in situ data for CG30159: 11 pix of staining in 7 body parts.
VDRC has 2 RNAi stocks for FBgn0050159 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain79 ± 24 of 4 0.20Down
Head253 ± 114 of 4 0.70Down
Eye196 ± 184 of 4 0.52Down
Thoracicoabdominal ganglion111 ± 04 of 4 0.30Down
Salivary gland1128 ± 484 of 4 3.00Up
Crop761 ± 94 of 4 2.00Up
Midgut379 ± 14 of 4 1.00None
Tubule363 ± 164 of 4 1.00None
Hindgut554 ± 174 of 4 1.50Up
Heart527 ± 24 of 4 1.40Up
Fat body416 ± 154 of 4 1.11None
Ovary550 ± 94 of 4 1.50Up
Testis159 ± 24 of 4 0.40Down
Male accessory glands338 ± 74 of 4 0.90None
Virgin spermatheca592 ± 74 of 4 1.58Up
Mated spermatheca525 ± 154 of 4 1.40Up
Adult carcass362 ± 94 of 4 1.00None
Larval CNS320 ± 194 of 4 0.85None
Larval Salivary gland434 ± 304 of 4 1.16None
Larval midgut431 ± 144 of 4 1.15None
Larval tubule253 ± 144 of 4 0.70Down
Larval hindgut516 ± 234 of 4 1.37Up
Larval fat body402 ± 464 of 4 1.10None
Larval trachea607 ± 384 of 4 1.62Up
Larval carcass786 ± 674 of 4 2.09Up
S2 cells (growing)348 ± 64 of 4 0.93None
Whole fly375 ± 204 of 4

Looking for CG30159-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime