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FlyAtlas: the Drosophila gene expression atlas

 University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG30161-RA through 18771 annotations produced 1 hits


(CG30161):

Annotation Number : CG30161
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0050161
Gbrowse : chr2R:20551054-20551880 (-) // 99.52 //
Probeset : 1640357_at
Accessions : protein= NP_611953;, nucleotide= NM_138109;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0050161.
BioGrid reports that CG30161 interacts with CG7046 CG3217 .
VDRC has 3 RNAi stocks for FBgn0050161 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.00Down
Head1 ± 00 of 4 0.10Down
Eye0 ± 00 of 4 0.03Down
Thoracicoabdominal ganglion1 ± 00 of 4 0.00Down
Salivary gland10 ± 30 of 4 0.40Down
Crop1 ± 00 of 4 0.00Down
Midgut5 ± 20 of 4 0.20Down
Tubule1 ± 00 of 4 0.10Down
Hindgut3 ± 10 of 4 0.10Down
Heart2 ± 10 of 4 0.11Down
Fat body2 ± 10 of 4 0.08Down
Ovary0 ± 00 of 4 0.00Down
Testis326 ± 34 of 412.30Up
Male accessory glands2 ± 00 of 4 0.10Down
Virgin spermatheca2 ± 00 of 4 0.11Down
Mated spermatheca4 ± 20 of 4 0.17Down
Adult carcass1 ± 00 of 4 0.10Down
Larval CNS0 ± 00 of 4 0.02Down
Larval Salivary gland1 ± 00 of 4 0.04Down
Larval midgut5 ± 10 of 4 0.21Down
Larval tubule1 ± 00 of 4 0.00Down
Larval hindgut2 ± 10 of 4 0.10Down
Larval fat body57 ± 272 of 4 2.20None
Larval trachea2 ± 30 of 4 0.10Down
Larval carcass7 ± 10 of 4 0.28Down
S2 cells (growing)2 ± 00 of 4 0.08Down
Whole fly26 ± 34 of 4

Looking for CG30161-RA. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime