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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG30163-RA through 18771 annotations produced 1 hits

CG30163 (Cpr60D):

Annotation Number : CG30163
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0050163
Gbrowse : chr2R:20550373-20550929 (-) // 100.0 //
Probeset : 1630538_at
Accessions : protein= NP_726468;, nucleotide= NM_166679;
Interpro : 0005214 // structural constituent of chitin-based cuticle // inferred from sequence or structural similarity /// 0042302
FlyMine data for FBgn0050163.
VDRC has 4 RNAi stocks for FBgn0050163 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 00 of 4 0.30None
Head33 24 of 4 5.50Up
Eye7 11 of 4 1.26None
Thoracicoabdominal ganglion1 10 of 4 0.30None
Salivary gland2 10 of 4 0.48None
Crop1 10 of 4 0.20None
Midgut2 10 of 4 0.40None
Tubule2 00 of 4 0.30Down
Hindgut3 10 of 4 0.50None
Heart4 10 of 4 0.68None
Fat body8 11 of 4 1.41None
Ovary2 11 of 4 0.40None
Testis3 10 of 4 0.50None
Male accessory glands1 00 of 4 0.30None
Virgin spermatheca1 00 of 4 0.31None
Mated spermatheca1 00 of 4 0.30None
Adult carcass39 14 of 4 6.60Up
Larval CNS0 00 of 4 0.10Down
Larval Salivary gland1 00 of 4 0.31None
Larval midgut4 10 of 4 0.78None
Larval tubule0 00 of 4 0.10Down
Larval hindgut108 214 of 417.95Up
Larval fat body3 10 of 4 0.60None
Larval trachea217 724 of 435.95Up
Larval carcass4076 3634 of 4673.72Up
S2 cells (growing)0 00 of 4 0.06Down
Whole fly6 10 of 4

Looking for CG30163-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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