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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG3017-RA through 18771 annotations produced 1 hits



Aminolevulinate synthase (Alas):

Annotation Number : CG3017
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0020764
Gbrowse : chr2R:19852223-19854271 (+) // 100.0 //
Probeset : 1632343_at
Accessions : protein= NP_477281;, nucleotide= NM_057933;
Pathway : 0005739 // mitochondrion // inferred from reviewed computational analysis /// 0005759 // mitochondrial matrix // inferre
Interpro : "0003824 // catalytic activity // inferred from electronic annotation /// 0003870 // 5-aminolevulinate synthase activity
FlyMine data for FBgn0020764.
Homophila reports that CG3017 is a close match (3e-25) to human gene HSAN;HSN1;LBC1;SPT1;SPTLC1 (NP_006406), a gene associated with Neuropathy, hereditary sensory and autonomic, type 1, 162400 (3).
BioGrid reports that CG3017 interacts with CG7828 CG32086 CG33130 .
VDRC has 2 RNAi stocks for FBgn0020764 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1154 ± 444 of 4 1.10None
Head719 ± 494 of 4 0.70None
Eye967 ± 664 of 4 0.96None
Thoracicoabdominal ganglion1380 ± 364 of 4 1.40Up
Salivary gland868 ± 274 of 4 0.86None
Crop937 ± 324 of 4 0.90None
Midgut649 ± 224 of 4 0.60Down
Tubule460 ± 264 of 4 0.50Down
Hindgut1136 ± 354 of 4 1.10None
Heart3188 ± 1254 of 4 3.17Up
Fat body2857 ± 4034 of 4 2.84Up
Ovary377 ± 104 of 4 0.40Down
Testis370 ± 164 of 4 0.40Down
Male accessory glands265 ± 104 of 4 0.30Down
Virgin spermatheca340 ± 254 of 4 0.34Down
Mated spermatheca282 ± 134 of 4 0.28Down
Adult carcass3277 ± 934 of 4 3.30Up
Larval CNS338 ± 184 of 4 0.34Down
Larval Salivary gland456 ± 284 of 4 0.45Down
Larval midgut485 ± 214 of 4 0.48Down
Larval tubule173 ± 64 of 4 0.20Down
Larval hindgut809 ± 224 of 4 0.81None
Larval fat body355 ± 434 of 4 0.40Down
Larval trachea430 ± 364 of 4 0.43Down
Larval carcass618 ± 254 of 4 0.62Down
S2 cells (growing)1052 ± 104 of 4 1.05None
Whole fly1004 ± 1014 of 4

Looking for CG3017-RA. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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