Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG30179-RA through 18771 annotations produced 1 hits



Muscle-specific LIM protein at 60A (Mlp60A):

Annotation Number : CG30179
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0259209
Gbrowse : chr2R:19964580-19965231 (+) // 100.0 //
Probeset : 1626709_at
Accessions : protein= NP_001137750; /// NP_788435;, nucleotide= NM_001144278; /// NM_176255;
Pathway : 0005634 // nucleus // non-traceable author statement /// 0005634 // nucleus // traceable author statement /// 0005634 //
Interpro : 0005515 // protein binding // traceable author statement /// 0008270 // zinc ion binding // inferred from electronic ann
FlyMine data for FBgn0259209.
Homophila reports that CG30179 is a close match (1e-25) to human gene CLP;CMD1M;CMH12;CRP3;CSRP3 (NP_003467), a gene associated with Cardiomyopathy, dilated, 1M, 607482 (3);Cardiomyopathy, familial hypertrophic, 12, 612124 (3).
TRiP has 1 RNAi stocks for FBgn0259209 available for purchase.
VDRC has 6 RNAi stocks for FBgn0259209 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.00Down
Head13 ± 42 of 4 0.40Down
Eye0 ± 00 of 4 0.02Down
Thoracicoabdominal ganglion3 ± 10 of 4 0.10Down
Salivary gland5 ± 20 of 4 0.17Down
Crop95 ± 64 of 4 2.80Up
Midgut23 ± 10 of 4 0.70None
Tubule1 ± 00 of 4 0.00Down
Hindgut22 ± 00 of 4 0.60None
Heart14 ± 12 of 4 0.43Down
Fat body1 ± 00 of 4 0.04Down
Ovary1 ± 00 of 4 0.00Down
Testis6 ± 10 of 4 0.20Down
Male accessory glands7 ± 30 of 4 0.20Down
Virgin spermatheca1 ± 00 of 4 0.05Down
Mated spermatheca2 ± 00 of 4 0.08Down
Adult carcass176 ± 44 of 4 5.10Up
Larval CNS0 ± 00 of 4 0.02Down
Larval Salivary gland3 ± 10 of 4 0.09Down
Larval midgut9 ± 20 of 4 0.28Down
Larval tubule1 ± 00 of 4 0.00Down
Larval hindgut2 ± 10 of 4 0.08Down
Larval fat body2 ± 00 of 4 0.10Down
Larval trachea1 ± 00 of 4 0.04Down
Larval carcass7 ± 10 of 4 0.23Down
S2 cells (growing)0 ± 00 of 4 0.03Down
Whole fly34 ± 53 of 4

Looking for CG30179-RA. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime