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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG3019-RA through 18771 annotations produced 1 hits



/// suppressor of white-apricot (CG42259 /// su(w[a])):

Annotation Number : CG3019
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0259144
Gbrowse : chrX:927348-940974 (+) // 100.0 //
Probeset : 1629072_at
Accessions : protein= NP_001036256;, nucleotide= NM_001042791;
Pathway : via spliceosome // non-traceable author statement /// 0006350 // transcription // inferred from electronic annotation /
Interpro : 0005634 // nucleus // inferred from electronic annotation /// 0005681 // spliceosomal complex // non-traceable author st
FlyMine data for FBgn0259144.
BioGrid reports that CG3019 interacts with CG31211 CG5343 CG31550 CG6843 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain28 14 of 4 0.30Down
Head66 64 of 4 0.60Down
Eye28 24 of 4 0.27Down
Thoracicoabdominal ganglion27 34 of 4 0.30Down
Salivary gland147 184 of 4 1.40None
Crop102 174 of 4 1.00None
Midgut32 24 of 4 0.30Down
Tubule80 104 of 4 0.80Down
Hindgut49 24 of 4 0.50Down
Heart47 44 of 4 0.45Down
Fat body65 114 of 4 0.62Down
Ovary143 44 of 4 1.40Up
Testis7 02 of 4 0.10Down
Male accessory glands986 264 of 4 9.40Up
Virgin spermatheca50 44 of 4 0.48Down
Mated spermatheca52 44 of 4 0.50Down
Adult carcass70 54 of 4 0.70Down
Larval CNS55 54 of 4 0.53Down
Larval Salivary gland112 104 of 4 1.07None
Larval midgut31 44 of 4 0.29Down
Larval tubule25 04 of 4 0.20Down
Larval hindgut63 44 of 4 0.60Down
Larval fat body44 44 of 4 0.40Down
Larval trachea195 114 of 4 1.86Up
Larval carcass919 904 of 4 8.73Up
S2 cells (growing)102 14 of 4 0.98None
Whole fly105 34 of 4

Looking for CG3019-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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