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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG3022-RA through 18771 annotations produced 1 hits



metabotropic GABA-B receptor subtype 3 (GABA-B-R3):

Annotation Number : CG3022
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031275
Gbrowse : chr2L:753118-762142 (+) // 100.0 //
Probeset : 1635114_a_at
Accessions : protein= NP_001162846; /// NP_523447; /// NP_722648;, nucleotide= NM_001169375; /// NM_078723; /// NM_164387;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electron
Interpro : 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferre
FlyMine data for FBgn0031275.
BDGP gene expression has embryonic in situ data for GABA-B-R3: 4 pix of staining in 1 body parts.
Homophila reports that CG3022 is a close match (2e-64) to human gene GPR51;GABBR2 (NP_005449), a gene associated with {Nicotine dependence, protection against}, 188890 (3);{Nicotine dependence, susceptibility to}, 188890 (3).
TRiP has 2 RNAi stocks for FBgn0031275 available for purchase.
VDRC has 2 RNAi stocks for FBgn0031275 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain394 124 of 424.60Up
Head73 54 of 4 4.60Up
Eye43 24 of 4 2.71Up
Thoracicoabdominal ganglion159 64 of 410.00Up
Salivary gland28 32 of 4 1.74Up
Crop11 22 of 4 0.70None
Midgut10 10 of 4 0.60None
Tubule5 00 of 4 0.30Down
Hindgut8 01 of 4 0.50Down
Heart5 10 of 4 0.32Down
Fat body9 24 of 4 0.59Down
Ovary7 11 of 4 0.50Down
Testis34 24 of 4 2.10Up
Male accessory glands6 30 of 4 0.40None
Virgin spermatheca9 23 of 4 0.56None
Mated spermatheca7 20 of 4 0.45Down
Adult carcass13 51 of 4 0.80None
Larval CNS102 64 of 4 6.39Up
Larval Salivary gland9 10 of 4 0.59Down
Larval midgut8 21 of 4 0.55None
Larval tubule5 10 of 4 0.40Down
Larval hindgut3 00 of 4 0.21Down
Larval fat body6 11 of 4 0.40Down
Larval trachea24 194 of 4 1.50None
Larval carcass9 12 of 4 0.56Down
S2 cells (growing)5 11 of 4 0.31Down
Whole fly16 24 of 4

Looking for CG3022-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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