Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG3025-RA through 18771 annotations produced 1 hits



chrX:5767867-5770884 (-) // 100.0 // (males-absent on the X):

Annotation Number : CG3025
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1633429_at
Accessions : protein= , nucleotide= NP_511051;
Pathway : "0006333 // chromatin assembly or disassembly // inferred from electronic annotation /// 0007549 // dosage compensation
Interpro : by hyperactivation of X chromosome // non-traceable author statement /// 0016573 // histone acetylation // non-traceabl
FlyMine data for full length.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain36 14 of 4 0.80None
Head25 64 of 4 0.60None
Eye25 14 of 4 0.54None
Thoracicoabdominal ganglion23 34 of 4 0.50None
Salivary gland32 90 of 4 0.70None
Crop25 34 of 4 0.50None
Midgut24 14 of 4 0.50None
Tubule26 23 of 4 0.60Down
Hindgut31 24 of 4 0.70None
Heart18 14 of 4 0.40None
Fat body34 72 of 4 0.75None
Ovary94 24 of 4 2.00Up
Testis27 14 of 4 0.60None
Male accessory glands50 64 of 4 1.10None
Virgin spermatheca16 10 of 4 0.36None
Mated spermatheca19 12 of 4 0.42None
Adult carcass31 31 of 4 0.70None
Larval CNS82 134 of 4 1.78None
Larval Salivary gland53 24 of 4 1.15None
Larval midgut34 34 of 4 0.73None
Larval tubule26 23 of 4 0.60None
Larval hindgut41 24 of 4 0.90None
Larval fat body22 12 of 4 0.50None
Larval trachea56 54 of 4 1.23None
Larval carcass46 34 of 4 1.00None
S2 cells (growing)123 24 of 4 2.66Up
Whole fly46 144 of 4

Looking for CG3025-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime