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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG30259-RA through 18771 annotations produced 1 hits



/// (CG30259 /// DmirCG30259):

Annotation Number : CG30259
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0050259
Gbrowse : chr2R:18588948-18591903 (-) // 100.0 //
Probeset : 1638823_at
Accessions : protein= NP_001097422; /// NP_611708;, nucleotide= NM_001103952; /// NM_137864;
FlyMine data for FBgn0050259.
VDRC has 3 RNAi stocks for FBgn0050259 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 00 of 4 0.70None
Head6 ± 01 of 4 1.80None
Eye6 ± 10 of 4 1.90None
Thoracicoabdominal ganglion4 ± 10 of 4 1.20None
Salivary gland6 ± 40 of 4 1.83None
Crop4 ± 20 of 4 1.20None
Midgut8 ± 20 of 4 2.30None
Tubule5 ± 00 of 4 1.60Up
Hindgut5 ± 10 of 4 1.60None
Heart3 ± 11 of 4 0.91None
Fat body2 ± 10 of 4 0.74None
Ovary2 ± 10 of 4 0.80None
Testis3 ± 10 of 4 0.90None
Male accessory glands22 ± 40 of 4 6.30Up
Virgin spermatheca3 ± 10 of 4 1.11None
Mated spermatheca3 ± 00 of 4 0.98None
Adult carcass3 ± 10 of 4 1.10None
Larval CNS3 ± 10 of 4 0.96None
Larval Salivary gland4 ± 20 of 4 1.26None
Larval midgut5 ± 20 of 4 1.53None
Larval tubule8 ± 21 of 4 2.50None
Larval hindgut3 ± 00 of 4 1.12None
Larval fat body6 ± 10 of 4 1.80None
Larval trachea5 ± 40 of 4 1.68None
Larval carcass2 ± 00 of 4 0.59None
S2 cells (growing)3 ± 10 of 4 0.90None
Whole fly3 ± 10 of 4

Looking for CG30259-RA. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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