FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG3027-RA through 18771 annotations produced 1 hits

pyd3 (pyd3):

Annotation Number : CG3027
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037513
Gbrowse : chr3R:3573634-3575798 (-) // 100.0 //
Probeset : 1630038_at
Accessions : protein= NP_649732;, nucleotide= NM_141475;
Interpro : "0003837 // beta-ureidopropionase activity // inferred from direct assay /// 0003837 // beta-ureidopropionase activity /
FlyMine data for FBgn0037513.
BDGP gene expression has embryonic in situ data for pyd3: 51 pix of staining in 10 body parts.
Homophila reports that CG3027 is a close match (8e-152) to human gene BUP1;UPB1 (NP_057411), a gene associated with Beta-ureidopropionase deficiency (3).
BioGrid reports that CG3027 interacts with CG3027 CG33017 .
TRiP has 1 RNAi stocks for FBgn0037513 available for purchase.
VDRC has 2 RNAi stocks for FBgn0037513 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	165 ± 6	4 of 4	1.50	Up
Head	272 ± 14	4 of 4	2.50	Up
Eye	278 ± 15	4 of 4	2.54	Up
Thoracicoabdominal ganglion	242 ± 8	4 of 4	2.20	Up
Salivary gland	484 ± 31	4 of 4	4.42	Up
Crop	547 ± 26	4 of 4	5.00	Up
Midgut	42 ± 3	4 of 4	0.40	Down
Tubule	1555 ± 325	4 of 4	14.20	Up
Hindgut	243 ± 7	4 of 4	2.20	Up
Heart	240 ± 7	4 of 4	2.19	Up
Fat body	233 ± 45	4 of 4	2.12	Up
Ovary	55 ± 1	4 of 4	0.50	Down
Testis	116 ± 13	4 of 4	1.10	None
Male accessory glands	81 ± 8	4 of 4	0.70	None
Virgin spermatheca	1160 ± 47	4 of 4	10.59	Up
Mated spermatheca	717 ± 80	4 of 4	6.55	Up
Adult carcass	278 ± 13	4 of 4	2.50	Up
Larval CNS	106 ± 24	4 of 4	0.97	None
Larval Salivary gland	14 ± 2	1 of 4	0.13	Down
Larval midgut	14 ± 3	0 of 4	0.13	Down
Larval tubule	946 ± 43	4 of 4	8.60	Up
Larval hindgut	159 ± 3	4 of 4	1.45	Up
Larval fat body	369 ± 57	4 of 4	3.40	Up
Larval trachea	29 ± 14	4 of 4	0.27	Down
Larval carcass	373 ± 50	4 of 4	3.40	Up
S2 cells (growing)	60 ± 3	4 of 4	0.55	Down
Whole fly	109 ± 9	4 of 4

Looking for CG3027-RA. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720