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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG30291-RA through 18771 annotations produced 1 hits



/// grauzone (CG30291 /// grau):

Annotation Number : CG30291
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0050291
Gbrowse : chr2R:16895259-16897078 (-) // 100.0 //
Probeset : 1639747_at
Accessions : protein= NP_726016;, nucleotide= NM_166417;
Pathway : 0005634 // nucleus // non-traceable author statement /// 0005634 // nucleus // inferred from direct assay
Interpro : 0003704 // specific RNA polymerase II transcription factor activity // non-traceable author statement /// 0003704 // spe
FlyMine data for FBgn0050291.
BDGP gene expression has embryonic in situ data for CG30291: 11 pix of staining in 4 body parts.
BioGrid reports that CG30291 interacts with CG3610 CG6156 .
VDRC has 2 RNAi stocks for FBgn0050291 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain90 ± 34 of 4 0.80Down
Head126 ± 44 of 4 1.20Up
Eye133 ± 64 of 4 1.23Up
Thoracicoabdominal ganglion92 ± 34 of 4 0.80Down
Salivary gland526 ± 234 of 4 4.85Up
Crop152 ± 114 of 4 1.40Up
Midgut159 ± 34 of 4 1.50Up
Tubule58 ± 64 of 4 0.50Down
Hindgut104 ± 34 of 4 1.00None
Heart113 ± 54 of 4 1.05None
Fat body143 ± 304 of 4 1.33None
Ovary126 ± 34 of 4 1.20Up
Testis51 ± 24 of 4 0.50Down
Male accessory glands360 ± 264 of 4 3.30Up
Virgin spermatheca92 ± 44 of 4 0.85Down
Mated spermatheca135 ± 34 of 4 1.25Up
Adult carcass124 ± 124 of 4 1.10None
Larval CNS98 ± 24 of 4 0.90Down
Larval Salivary gland579 ± 584 of 4 5.34Up
Larval midgut101 ± 54 of 4 0.93None
Larval tubule100 ± 34 of 4 0.90None
Larval hindgut106 ± 64 of 4 0.98None
Larval fat body192 ± 194 of 4 1.80Up
Larval trachea150 ± 154 of 4 1.39Up
Larval carcass143 ± 114 of 4 1.32None
S2 cells (growing)80 ± 74 of 4 0.74Down
Whole fly108 ± 14 of 4

Looking for CG30291-RA. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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