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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG30293-RA through 18771 annotations produced 1 hits



CG30293 (Cht12):

Annotation Number : CG30293
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0050293
Gbrowse : chr2R:16950682-16952468 (-) // 100.0 //
Probeset : 1631209_at
Accessions : protein= NP_726022;, nucleotide= NM_166420;
Pathway : 0005576 // extracellular region // inferred from electronic annotation
Interpro : "0003824 // catalytic activity // inferred from electronic annotation /// 0004553 // hydrolase activity
FlyMine data for FBgn0050293.
Homophila reports that CG30293 is a close match (3e-39) to human gene CHIT (NP_003456), a gene associated with [Chitotriosidase deficiency] (3).
VDRC has 2 RNAi stocks for FBgn0050293 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.00Down
Head1 ± 00 of 4 0.00Down
Eye1 ± 00 of 4 0.02Down
Thoracicoabdominal ganglion1 ± 00 of 4 0.00Down
Salivary gland4 ± 10 of 4 0.08Down
Crop0 ± 00 of 4 0.00Down
Midgut2 ± 10 of 4 0.00Down
Tubule3 ± 00 of 4 0.10Down
Hindgut1 ± 00 of 4 0.00Down
Heart1 ± 00 of 4 0.02Down
Fat body1 ± 00 of 4 0.03Down
Ovary0 ± 00 of 4 0.00Down
Testis830 ± 184 of 414.00Up
Male accessory glands1 ± 00 of 4 0.00Down
Virgin spermatheca1 ± 00 of 4 0.02Down
Mated spermatheca1 ± 00 of 4 0.03Down
Adult carcass1 ± 00 of 4 0.00Down
Larval CNS0 ± 00 of 4 0.01Down
Larval Salivary gland1 ± 00 of 4 0.02Down
Larval midgut2 ± 00 of 4 0.03Down
Larval tubule4 ± 20 of 4 0.10Down
Larval hindgut0 ± 00 of 4 0.02Down
Larval fat body87 ± 533 of 4 1.50None
Larval trachea4 ± 50 of 4 0.07Down
Larval carcass0 ± 00 of 4 0.01Down
S2 cells (growing)0 ± 00 of 4 0.01Down
Whole fly59 ± 34 of 4

Looking for CG30293-RA. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime