FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG30295-RA through 18771 annotations produced 1 hits

Ipk1 (Ipk1):

Annotation Number : CG30295
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0050295
Gbrowse : chr2R:16758310-16765973 (+) // 100.0 //
Probeset : 1641161_at
Accessions : protein= NP_001097387; /// NP_611522;, nucleotide= NM_001103917; /// NM_137678;
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electro
FlyMine data for FBgn0050295.
BDGP gene expression has embryonic in situ data for CG30295: 4 pix of staining in 1 body parts.
BioGrid reports that CG30295 interacts with CG7928 .
TRiP has 1 RNAi stocks for FBgn0050295 available for purchase.
VDRC has 3 RNAi stocks for FBgn0050295 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	7 ± 1	1 of 4	0.80	None
Head	8 ± 1	2 of 4	0.90	None
Eye	50 ± 3	4 of 4	5.05	Up
Thoracicoabdominal ganglion	6 ± 2	2 of 4	0.70	None
Salivary gland	16 ± 5	2 of 4	1.66	None
Crop	10 ± 2	3 of 4	1.10	None
Midgut	8 ± 1	2 of 4	0.90	None
Tubule	8 ± 0	2 of 4	0.80	Down
Hindgut	9 ± 1	2 of 4	0.90	None
Heart	5 ± 1	1 of 4	0.55	None
Fat body	6 ± 2	2 of 4	0.62	None
Ovary	8 ± 1	3 of 4	0.90	None
Testis	3 ± 0	0 of 4	0.30	None
Male accessory glands	5 ± 1	0 of 4	0.60	None
Virgin spermatheca	2 ± 0	0 of 4	0.21	None
Mated spermatheca	5 ± 0	0 of 4	0.50	None
Adult carcass	10 ± 2	2 of 4	1.10	None
Larval CNS	13 ± 0	4 of 4	1.33	None
Larval Salivary gland	4 ± 1	0 of 4	0.49	None
Larval midgut	9 ± 1	4 of 4	0.93	None
Larval tubule	43 ± 5	4 of 4	4.40	Up
Larval hindgut	8 ± 0	4 of 4	0.81	None
Larval fat body	14 ± 1	3 of 4	1.50	None
Larval trachea	12 ± 1	4 of 4	1.27	None
Larval carcass	5 ± 1	0 of 4	0.53	None
S2 cells (growing)	12 ± 1	4 of 4	1.29	None
Whole fly	9 ± 2	1 of 4

Looking for CG30295-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720