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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG30329-RA through 18771 annotations produced 1 hits



Vha100-3 (Vha100-3):

Annotation Number : CG30329
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0028669
Gbrowse : chr2R:14796504-14799219 (-) // 100.0 //
Probeset : 1627133_at
Accessions : protein= NP_725837;, nucleotide= NM_166313;
Pathway : "0000220 // vacuolar proton-transporting V-type ATPase
Interpro : V0 domain // inferred from sequence or structural similarity /// 0033177 // proton-transporting two-sector ATPase compl
FlyMine data for FBgn0028669.
Homophila reports that CG30329 is a close match (8e-86) to human gene OC116;OPTB1;TCIRG1;TIRC7 (NP_006044), a gene associated with Osteopetrosis, recessive 1, 259700 (3).
VDRC has 2 RNAi stocks for FBgn0028669 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 ± 00 of 4 0.10Down
Head3 ± 00 of 4 0.10Down
Eye2 ± 00 of 4 0.05Down
Thoracicoabdominal ganglion7 ± 00 of 4 0.20Down
Salivary gland9 ± 40 of 4 0.20Down
Crop5 ± 10 of 4 0.10Down
Midgut1 ± 00 of 4 0.00Down
Tubule4 ± 10 of 4 0.10Down
Hindgut1 ± 00 of 4 0.00Down
Heart1 ± 00 of 4 0.03Down
Fat body4 ± 40 of 4 0.10Down
Ovary2 ± 00 of 4 0.10Down
Testis493 ± 144 of 410.30Up
Male accessory glands8 ± 21 of 4 0.20Down
Virgin spermatheca3 ± 01 of 4 0.07Down
Mated spermatheca3 ± 11 of 4 0.08Down
Adult carcass11 ± 11 of 4 0.20Down
Larval CNS2 ± 10 of 4 0.05Down
Larval Salivary gland7 ± 21 of 4 0.16Down
Larval midgut2 ± 00 of 4 0.04Down
Larval tubule3 ± 10 of 4 0.10Down
Larval hindgut2 ± 10 of 4 0.06Down
Larval fat body68 ± 334 of 4 1.40None
Larval trachea4 ± 31 of 4 0.09Down
Larval carcass5 ± 10 of 4 0.11Down
S2 cells (growing)3 ± 00 of 4 0.08Down
Whole fly47 ± 34 of 4

Looking for CG30329-RA. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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