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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG30330-RA through 18771 annotations produced 1 hits



Gustatory receptor 59d (Gr59d):

Annotation Number : CG30330
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0041236
Gbrowse : chr2R:18991463-18992692 (-) // 100.0 //
Probeset : 1622900_at
Accessions : protein= NP_611758;, nucleotide= NM_137914;
Pathway : 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic an
Interpro : 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferre
FlyMine data for FBgn0041236.
VDRC has 2 RNAi stocks for FBgn0041236 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 11 of 4 0.90None
Head5 ± 01 of 4 1.20None
Eye4 ± 10 of 4 0.96None
Thoracicoabdominal ganglion5 ± 11 of 4 1.20None
Salivary gland10 ± 31 of 4 2.40None
Crop3 ± 10 of 4 0.70None
Midgut2 ± 00 of 4 0.50None
Tubule4 ± 00 of 4 1.00None
Hindgut4 ± 11 of 4 1.10None
Heart2 ± 10 of 4 0.61None
Fat body3 ± 20 of 4 0.70None
Ovary2 ± 01 of 4 0.60None
Testis5 ± 02 of 4 1.40None
Male accessory glands30 ± 24 of 4 7.10Up
Virgin spermatheca3 ± 10 of 4 0.70None
Mated spermatheca3 ± 00 of 4 0.74None
Adult carcass4 ± 10 of 4 1.10None
Larval CNS4 ± 13 of 4 0.97None
Larval Salivary gland5 ± 00 of 4 1.20None
Larval midgut2 ± 10 of 4 0.63None
Larval tubule6 ± 11 of 4 1.40None
Larval hindgut2 ± 11 of 4 0.66None
Larval fat body4 ± 10 of 4 1.00None
Larval trachea2 ± 10 of 4 0.48None
Larval carcass1 ± 00 of 4 0.39None
S2 cells (growing)3 ± 01 of 4 0.84None
Whole fly4 ± 10 of 4

Looking for CG30330-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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