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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG30338-RA through 18771 annotations produced 1 hits



(CG30338):

Annotation Number : CG30338
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0050338
Gbrowse : chr2R:5486088-5486955 (+) // 100.0 //
Probeset : 1640499_at
Accessions : protein= NP_724811;, nucleotide= NM_165685;
FlyMine data for FBgn0050338.
VDRC has 2 RNAi stocks for FBgn0050338 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain18 14 of 4 0.60Down
Head30 14 of 4 1.00None
Eye35 24 of 4 1.13None
Thoracicoabdominal ganglion23 14 of 4 0.70Down
Salivary gland72 63 of 4 2.32Up
Crop40 34 of 4 1.30None
Midgut43 34 of 4 1.40Up
Tubule36 23 of 4 1.20Up
Hindgut44 24 of 4 1.40Up
Heart22 34 of 4 0.72None
Fat body34 44 of 4 1.10None
Ovary30 44 of 4 1.00None
Testis46 14 of 4 1.50Up
Male accessory glands60 44 of 4 1.90Up
Virgin spermatheca33 24 of 4 1.05None
Mated spermatheca37 14 of 4 1.19None
Adult carcass31 41 of 4 1.00None
Larval CNS23 14 of 4 0.75Down
Larval Salivary gland64 34 of 4 2.06Up
Larval midgut45 14 of 4 1.44Up
Larval tubule56 04 of 4 1.80Up
Larval hindgut42 44 of 4 1.35None
Larval fat body34 24 of 4 1.10None
Larval trachea37 54 of 4 1.19None
Larval carcass58 24 of 4 1.86Up
S2 cells (growing)31 14 of 4 1.01None
Whole fly31 24 of 4

Looking for CG30338-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime