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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG30340-RA through 18771 annotations produced 1 hits



(CG30340):

Annotation Number : CG30340
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0050340
Gbrowse : chr2R:5487413-5488636 (-) // 100.0 //
Probeset : 1626472_at
Accessions : protein= NP_724812;, nucleotide= NM_165686;
Pathway : 0016021 // integral to membrane // inferred from sequence or structural similarity /// 0016021 // integral to membrane /
Interpro : 0004930 // G-protein coupled receptor activity // inferred from sequence or structural similarity /// 0008188 // neurope
FlyMine data for FBgn0050340.
Homophila reports that CG30340 is a close match (3e-11) to human gene EDNRA (NP_001948), a gene associated with Migraine, resistance to, 157300 (3).
TRiP has 1 RNAi stocks for FBgn0050340 available for purchase.
VDRC has 2 RNAi stocks for FBgn0050340 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 00 of 4 0.30None
Head0 00 of 4 0.30None
Eye1 00 of 4 0.56None
Thoracicoabdominal ganglion0 00 of 4 0.30None
Salivary gland1 00 of 4 0.65None
Crop1 00 of 4 0.40None
Midgut19 32 of 4 6.90Up
Tubule14 31 of 4 5.30Up
Hindgut2 10 of 4 0.70None
Heart2 00 of 4 0.78None
Fat body1 00 of 4 0.36None
Ovary2 10 of 4 0.90None
Testis0 00 of 4 0.20None
Male accessory glands30 33 of 410.80Up
Virgin spermatheca3 10 of 4 1.11None
Mated spermatheca0 00 of 4 0.32None
Adult carcass1 00 of 4 0.50None
Larval CNS0 00 of 4 0.27None
Larval Salivary gland1 00 of 4 0.38None
Larval midgut15 00 of 4 5.66Up
Larval tubule3 10 of 4 1.20None
Larval hindgut0 00 of 4 0.24None
Larval fat body2 10 of 4 0.80None
Larval trachea0 00 of 4 0.24None
Larval carcass3 10 of 4 1.20None
S2 cells (growing)56 24 of 420.34Up
Whole fly2 10 of 4

Looking for CG30340-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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