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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG30345-RA through 18771 annotations produced 1 hits



(CG30345):

Annotation Number : CG30345
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0050345
Gbrowse : chr2R:5036331-5038809 (+) // 100.0 //
Probeset : 1627500_at
Accessions : protein= NP_724760;, nucleotide= NM_165656;
Pathway : 0016020 // membrane // inferred from electronic annotation
Interpro : 0005215 // transporter activity // inferred from electronic annotation
FlyMine data for FBgn0050345.
TRiP has 1 RNAi stocks for FBgn0050345 available for purchase.
VDRC has 3 RNAi stocks for FBgn0050345 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain14 ± 02 of 4 0.50Down
Head36 ± 14 of 4 1.40Up
Eye31 ± 34 of 4 1.20None
Thoracicoabdominal ganglion11 ± 11 of 4 0.40Down
Salivary gland22 ± 60 of 4 0.84None
Crop15 ± 01 of 4 0.60Down
Midgut79 ± 24 of 4 3.00Up
Tubule20 ± 12 of 4 0.80Down
Hindgut83 ± 64 of 4 3.10Up
Heart39 ± 14 of 4 1.48Up
Fat body35 ± 54 of 4 1.33Up
Ovary10 ± 10 of 4 0.40Down
Testis11 ± 03 of 4 0.40Down
Male accessory glands118 ± 14 of 4 4.40Up
Virgin spermatheca32 ± 32 of 4 1.20None
Mated spermatheca27 ± 23 of 4 1.05None
Adult carcass63 ± 24 of 4 2.40Up
Larval CNS3 ± 20 of 4 0.13Down
Larval Salivary gland24 ± 14 of 4 0.92None
Larval midgut218 ± 294 of 4 8.22Up
Larval tubule54 ± 64 of 4 2.10Up
Larval hindgut94 ± 94 of 4 3.56Up
Larval fat body97 ± 74 of 4 3.70Up
Larval trachea9 ± 41 of 4 0.37Down
Larval carcass27 ± 94 of 4 1.05None
S2 cells (growing)68 ± 54 of 4 2.58Up
Whole fly26 ± 24 of 4

Looking for CG30345-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime