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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG3035-RA through 18771 annotations produced 1 hits



carmine (cm):

Annotation Number : CG3035
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0000330
Gbrowse : chrX:6903332-6905168 (-) // 100.0 //
Probeset : 1636858_at
Accessions : protein= NP_788873;, nucleotide= NM_176700;
Pathway : via spliceosome // inferred from mutant phenotype /// 0006727 // ommochrome biosynthetic process // inferred from mutan
Interpro : 0005634 // nucleus // inferred by curator /// 0008021 // synaptic vesicle // traceable author statement /// 0030131 // c
FlyMine data for FBgn0000330.
BioGrid reports that CG3035 interacts with CG32211 CG4554 CG9364 CG31036 CG7257 .
TRiP has 1 RNAi stocks for FBgn0000330 available for purchase.
VDRC has 2 RNAi stocks for FBgn0000330 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain142 ± 54 of 4 1.80Up
Head108 ± 84 of 4 1.30None
Eye118 ± 34 of 4 1.47Up
Thoracicoabdominal ganglion152 ± 14 of 4 1.90Up
Salivary gland189 ± 74 of 4 2.35Up
Crop91 ± 34 of 4 1.10None
Midgut58 ± 14 of 4 0.70None
Tubule63 ± 54 of 4 0.80Down
Hindgut108 ± 14 of 4 1.30Up
Heart71 ± 14 of 4 0.89None
Fat body79 ± 104 of 4 0.98None
Ovary135 ± 44 of 4 1.70Up
Testis40 ± 24 of 4 0.50Down
Male accessory glands140 ± 54 of 4 1.70Up
Virgin spermatheca60 ± 24 of 4 0.75None
Mated spermatheca69 ± 24 of 4 0.86None
Adult carcass77 ± 34 of 4 1.00None
Larval CNS111 ± 74 of 4 1.38Up
Larval Salivary gland147 ± 74 of 4 1.82Up
Larval midgut75 ± 34 of 4 0.93None
Larval tubule83 ± 74 of 4 1.00None
Larval hindgut110 ± 34 of 4 1.37Up
Larval fat body117 ± 84 of 4 1.50Up
Larval trachea141 ± 134 of 4 1.75Up
Larval carcass95 ± 24 of 4 1.18None
S2 cells (growing)150 ± 34 of 4 1.86Up
Whole fly80 ± 74 of 4

Looking for CG3035-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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