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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG30357-RA through 18771 annotations produced 1 hits



(CG30357):

Annotation Number : CG30357
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0050357
Gbrowse : chr2R:4607657-4609129 (-) // 100.0 //
Probeset : 1636731_at
Accessions : protein= NP_724707;, nucleotide= NM_165621;
Interpro : 0005515 // protein binding // inferred from electronic annotation
FlyMine data for FBgn0050357.
VDRC has 2 RNAi stocks for FBgn0050357 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain7 ± 00 of 4 0.40Down
Head3 ± 10 of 4 0.20Down
Eye2 ± 00 of 4 0.12Down
Thoracicoabdominal ganglion4 ± 10 of 4 0.20Down
Salivary gland3 ± 00 of 4 0.16Down
Crop5 ± 10 of 4 0.30Down
Midgut11 ± 20 of 4 0.60Down
Tubule3 ± 00 of 4 0.20Down
Hindgut5 ± 10 of 4 0.30Down
Heart1 ± 00 of 4 0.07Down
Fat body3 ± 10 of 4 0.17Down
Ovary2 ± 10 of 4 0.10Down
Testis184 ± 24 of 4 9.20Up
Male accessory glands9 ± 30 of 4 0.50Down
Virgin spermatheca1 ± 00 of 4 0.07Down
Mated spermatheca1 ± 00 of 4 0.08Down
Adult carcass7 ± 30 of 4 0.40Down
Larval CNS1 ± 10 of 4 0.08Down
Larval Salivary gland4 ± 10 of 4 0.23Down
Larval midgut5 ± 10 of 4 0.27Down
Larval tubule10 ± 20 of 4 0.50Down
Larval hindgut2 ± 10 of 4 0.13Down
Larval fat body23 ± 131 of 4 1.20None
Larval trachea2 ± 20 of 4 0.14Down
Larval carcass2 ± 00 of 4 0.15Down
S2 cells (growing)11 ± 10 of 4 0.55Down
Whole fly20 ± 23 of 4

Looking for CG30357-RA. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime