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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG3036-RA through 18771 annotations produced 1 hits



(CG3036):

Annotation Number : CG3036
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031645
Gbrowse : chr2L:4892114-4903889 (+) // 100.0 //
Probeset : 1632317_at
Accessions : protein= NP_608873;, nucleotide= NM_135029;
Pathway : 0016021 // integral to membrane // inferred from sequence or structural similarity
Interpro : 0005436 // sodium:phosphate symporter activity // inferred from sequence or structural similarity
FlyMine data for FBgn0031645.
BDGP gene expression has embryonic in situ data for CG3036: 41 pix of staining in 24 body parts.
Homophila reports that CG3036 is a close match (3e-65) to human gene DFNA25;SLC17A8;VGLUT3 (NP_647480), a gene associated with Deafness, autosomal dominant 25, 605583 (3).
VDRC has 3 RNAi stocks for FBgn0031645 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain116 54 of 4 0.30Down
Head1091 654 of 4 2.90Up
Eye1666 1144 of 4 4.42Up
Thoracicoabdominal ganglion238 124 of 4 0.60Down
Salivary gland39 33 of 4 0.11Down
Crop209 114 of 4 0.60Down
Midgut715 604 of 4 1.90Up
Tubule47 63 of 4 0.10Down
Hindgut1338 344 of 4 3.60Up
Heart1614 724 of 4 4.28Up
Fat body2091 1344 of 4 5.55Up
Ovary156 24 of 4 0.40Down
Testis9 13 of 4 0.00Down
Male accessory glands33 24 of 4 0.10Down
Virgin spermatheca582 704 of 4 1.54None
Mated spermatheca1255 1504 of 4 3.33Up
Adult carcass991 474 of 4 2.60Up
Larval CNS111 204 of 4 0.30Down
Larval Salivary gland45 34 of 4 0.12Down
Larval midgut371 464 of 4 0.98None
Larval tubule37 34 of 4 0.10Down
Larval hindgut1216 664 of 4 3.23Up
Larval fat body671 354 of 4 1.80Up
Larval trachea789 1144 of 4 2.09Up
Larval carcass733 1134 of 4 1.95Up
S2 cells (growing)18 04 of 4 0.05Down
Whole fly377 284 of 4

Looking for CG3036-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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