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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG30362-RA through 18771 annotations produced 1 hits

borrelly (boly):

Annotation Number : CG30362
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0050362
Gbrowse : chr2R:4253046-4254165 (-) // 100.0 //
Probeset : 1630495_at
Accessions : protein= NP_610373;, nucleotide= NM_136529;
FlyMine data for FBgn0050362.
BDGP gene expression has embryonic in situ data for CG30362: 19 pix of staining in 7 body parts.
VDRC has 3 RNAi stocks for FBgn0050362 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 00 of 4 0.00Down
Head8 20 of 4 0.00Down
Eye5 20 of 4 0.03Down
Thoracicoabdominal ganglion5 20 of 4 0.00Down
Salivary gland22 40 of 4 0.12Down
Crop7 20 of 4 0.00Down
Midgut10 30 of 4 0.10Down
Tubule9 20 of 4 0.00Down
Hindgut9 20 of 4 0.10Down
Heart3 20 of 4 0.02Down
Fat body9 40 of 4 0.05Down
Ovary2 00 of 4 0.00Down
Testis1686 814 of 4 9.00Up
Male accessory glands6 10 of 4 0.00Down
Virgin spermatheca7 20 of 4 0.04Down
Mated spermatheca8 10 of 4 0.04Down
Adult carcass12 30 of 4 0.10Down
Larval CNS3 20 of 4 0.02Down
Larval Salivary gland13 30 of 4 0.07Down
Larval midgut4 10 of 4 0.02Down
Larval tubule9 10 of 4 0.10Down
Larval hindgut10 10 of 4 0.06Down
Larval fat body167 763 of 4 0.90None
Larval trachea10 90 of 4 0.06Down
Larval carcass8 10 of 4 0.04Down
S2 cells (growing)8 10 of 4 0.05Down
Whole fly187 104 of 4

Looking for CG30362-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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