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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG30363-RA through 18771 annotations produced 2 hits



comas sola /// swift-tuttle (cola /// swif):

Annotation Number : CG30363
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0050363 /// FBgn0050366
Gbrowse : chr2R:4251896-4252850 (-) // 100.0 //
Probeset : 1626604_at
Accessions : protein= NP_001097231; /// NP_724672; /// NP_724673;, nucleotide= NM_001103761; /// NM_165604; /// NM_165605;
FlyMine data for FBgn0050363 /// FBgn0050366.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.10Down
Head2 ± 00 of 4 0.20Down
Eye1 ± 00 of 4 0.10Down
Thoracicoabdominal ganglion1 ± 00 of 4 0.10Down
Salivary gland16 ± 50 of 4 0.89None
Crop2 ± 10 of 4 0.10Down
Midgut2 ± 00 of 4 0.10Down
Tubule3 ± 10 of 4 0.20Down
Hindgut1 ± 00 of 4 0.10Down
Heart0 ± 00 of 4 0.05Down
Fat body1 ± 00 of 4 0.08Down
Ovary0 ± 00 of 4 0.00Down
Testis209 ± 194 of 411.50Up
Male accessory glands4 ± 10 of 4 0.20Down
Virgin spermatheca4 ± 00 of 4 0.24Down
Mated spermatheca2 ± 00 of 4 0.13Down
Adult carcass5 ± 10 of 4 0.30Down
Larval CNS1 ± 00 of 4 0.07Down
Larval Salivary gland3 ± 20 of 4 0.21Down
Larval midgut1 ± 00 of 4 0.10Down
Larval tubule1 ± 00 of 4 0.10Down
Larval hindgut2 ± 00 of 4 0.12Down
Larval fat body19 ± 101 of 4 1.10None
Larval trachea3 ± 30 of 4 0.21Down
Larval carcass10 ± 30 of 4 0.60None
S2 cells (growing)1 ± 00 of 4 0.06Down
Whole fly18 ± 23 of 4



comas sola /// swift-tuttle (cola /// swif):

Annotation Number : CG30366
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0050363 /// FBgn0050366
Gbrowse : chr2R:4250894-4251893 (-) // 100.0 //
Probeset : 1633966_at
Accessions : protein= NP_001097231; /// NP_724672; /// NP_724673;, nucleotide= NM_001103761; /// NM_165604; /// NM_165605;
FlyMine data for FBgn0050363 /// FBgn0050366.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 ± 00 of 4 0.00Down
Head4 ± 00 of 4 0.00Down
Eye3 ± 10 of 4 0.03Down
Thoracicoabdominal ganglion4 ± 20 of 4 0.00Down
Salivary gland22 ± 102 of 4 0.21Down
Crop10 ± 11 of 4 0.10Down
Midgut4 ± 00 of 4 0.00Down
Tubule6 ± 11 of 4 0.10Down
Hindgut7 ± 11 of 4 0.10Down
Heart1 ± 00 of 4 0.02Down
Fat body4 ± 20 of 4 0.04Down
Ovary0 ± 00 of 4 0.00Down
Testis1108 ± 194 of 410.50Up
Male accessory glands5 ± 20 of 4 0.10Down
Virgin spermatheca8 ± 11 of 4 0.08Down
Mated spermatheca7 ± 20 of 4 0.07Down
Adult carcass5 ± 20 of 4 0.10Down
Larval CNS1 ± 10 of 4 0.02Down
Larval Salivary gland1 ± 00 of 4 0.01Down
Larval midgut4 ± 10 of 4 0.04Down
Larval tubule7 ± 10 of 4 0.10Down
Larval hindgut4 ± 00 of 4 0.04Down
Larval fat body90 ± 483 of 4 0.90None
Larval trachea5 ± 61 of 4 0.05Down
Larval carcass6 ± 10 of 4 0.06Down
S2 cells (growing)1 ± 00 of 4 0.01Down
Whole fly105 ± 64 of 4

Looking for CG30363-RA. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime