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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG30371-RA through 18771 annotations produced 1 hits



(CG30371):

Annotation Number : CG30371
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0050371
Gbrowse : chr2R:4155179-4156813 (-) // 100.0 //
Probeset : 1627709_at
Accessions : protein= NP_610370;, nucleotide= NM_136526;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity /
FlyMine data for FBgn0050371.
Homophila reports that CG30371 is a close match (4e-11) to human gene IF (NP_000195), a gene associated with C3b inactivator deficiency (3).
TRiP has 1 RNAi stocks for FBgn0050371 available for purchase.
VDRC has 3 RNAi stocks for FBgn0050371 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain5 ± 11 of 4 0.00Down
Head21 ± 64 of 4 0.10Down
Eye2 ± 20 of 4 0.02Down
Thoracicoabdominal ganglion50 ± 194 of 4 0.30Down
Salivary gland14720 ± 3394 of 491.72Up
Crop719 ± 944 of 4 4.50Up
Midgut3 ± 10 of 4 0.00Down
Tubule2695 ± 4684 of 416.80Up
Hindgut18 ± 23 of 4 0.10Down
Heart0 ± 00 of 4 0.00Down
Fat body13 ± 101 of 4 0.08Down
Ovary1 ± 00 of 4 0.00Down
Testis2 ± 10 of 4 0.00Down
Male accessory glands4 ± 20 of 4 0.00Down
Virgin spermatheca4144 ± 1154 of 425.82Up
Mated spermatheca4320 ± 2904 of 426.92Up
Adult carcass235 ± 424 of 4 1.50None
Larval CNS3 ± 10 of 4 0.02Down
Larval Salivary gland3350 ± 2184 of 420.88Up
Larval midgut28 ± 84 of 4 0.18Down
Larval tubule3479 ± 804 of 421.70Up
Larval hindgut21 ± 34 of 4 0.13Down
Larval fat body3 ± 00 of 4 0.00Down
Larval trachea2 ± 20 of 4 0.02Down
Larval carcass2 ± 10 of 4 0.02Down
S2 cells (growing)4 ± 10 of 4 0.03Down
Whole fly160 ± 174 of 4

Looking for CG30371-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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