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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG30381-RA through 18771 annotations produced 1 hits



(CG30381):

Annotation Number : CG30381
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0050381
Gbrowse : chr2R:3817485-3817842 (-) // 100.0 //
Probeset : 1623358_at
Accessions : protein= NP_001097221; /// NP_724624;, nucleotide= NM_001103751; /// NM_165572;
FlyMine data for FBgn0050381.
VDRC has 3 RNAi stocks for FBgn0050381 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain40 ± 24 of 4 1.30Up
Head18 ± 11 of 4 0.60Down
Eye16 ± 34 of 4 0.54Down
Thoracicoabdominal ganglion45 ± 14 of 4 1.50Up
Salivary gland27 ± 10 of 4 0.92None
Crop13 ± 10 of 4 0.40Down
Midgut62 ± 34 of 4 2.10Up
Tubule45 ± 64 of 4 1.50Up
Hindgut11 ± 30 of 4 0.40Down
Heart22 ± 04 of 4 0.77None
Fat body11 ± 10 of 4 0.39Down
Ovary51 ± 14 of 4 1.70Up
Testis3 ± 10 of 4 0.10Down
Male accessory glands17 ± 50 of 4 0.60None
Virgin spermatheca13 ± 20 of 4 0.44Down
Mated spermatheca17 ± 10 of 4 0.57Down
Adult carcass12 ± 60 of 4 0.40None
Larval CNS39 ± 54 of 4 1.31Up
Larval Salivary gland10 ± 41 of 4 0.35Down
Larval midgut15 ± 10 of 4 0.51Down
Larval tubule15 ± 21 of 4 0.50Down
Larval hindgut6 ± 10 of 4 0.21Down
Larval fat body22 ± 30 of 4 0.70None
Larval trachea34 ± 64 of 4 1.15None
Larval carcass9 ± 10 of 4 0.30Down
S2 cells (growing)59 ± 24 of 4 1.99Up
Whole fly30 ± 23 of 4

Looking for CG30381-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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