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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG3039-RA through 18771 annotations produced 1 hits



Innexin 1 (ogre):

Annotation Number : CG3039
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0004646
Gbrowse : chrX:6868061-6875731 (-) // 99.41 //
Probeset : 1628323_s_at
Accessions : protein= NP_524824; /// NP_727147;, nucleotide= NM_080085; /// NM_167101;
Pathway : 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic anno
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0004646.
BDGP gene expression has embryonic in situ data for ogre: 15 pix of staining in 21 body parts.
BioGrid reports that CG3039 interacts with CG5212 .
TRiP has 1 RNAi stocks for FBgn0004646 available for purchase.
VDRC has 2 RNAi stocks for FBgn0004646 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain622 244 of 4 3.00Up
Head457 914 of 4 2.20None
Eye415 174 of 4 2.02Up
Thoracicoabdominal ganglion649 464 of 4 3.20Up
Salivary gland20 51 of 4 0.10Down
Crop329 74 of 4 1.60Up
Midgut57 34 of 4 0.30Down
Tubule15 12 of 4 0.10Down
Hindgut314 74 of 4 1.50Up
Heart194 134 of 4 0.94None
Fat body504 694 of 4 2.45Up
Ovary93 64 of 4 0.50Down
Testis93 74 of 4 0.50Down
Male accessory glands507 274 of 4 2.50Up
Virgin spermatheca137 64 of 4 0.67None
Mated spermatheca132 154 of 4 0.64None
Adult carcass248 304 of 4 1.20None
Larval CNS900 914 of 4 4.37Up
Larval Salivary gland224 114 of 4 1.09None
Larval midgut28 24 of 4 0.14Down
Larval tubule13 23 of 4 0.10Down
Larval hindgut156 84 of 4 0.76None
Larval fat body79 34 of 4 0.40Down
Larval trachea534 494 of 4 2.60Up
Larval carcass456 374 of 4 2.22Up
S2 cells (growing)29 24 of 4 0.14Down
Whole fly205 284 of 4

Looking for CG3039-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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