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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG30390-RA through 18771 annotations produced 1 hits



(Sgf29):

Annotation Number : CG30390
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0050390
Gbrowse : chr2R:17179818-17180981 (-) // 100.0 //
Probeset : 1623090_at
Accessions : protein= NP_726051;, nucleotide= NM_166436;
FlyMine data for FBgn0050390.
TRiP has 2 RNAi stocks for FBgn0050390 available for purchase.
VDRC has 3 RNAi stocks for FBgn0050390 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain130 ± 84 of 4 1.50Up
Head65 ± 64 of 4 0.80Down
Eye67 ± 44 of 4 0.80Down
Thoracicoabdominal ganglion116 ± 44 of 4 1.40Up
Salivary gland70 ± 44 of 4 0.84Down
Crop64 ± 14 of 4 0.80Down
Midgut54 ± 44 of 4 0.60Down
Tubule74 ± 44 of 4 0.90Down
Hindgut55 ± 23 of 4 0.70Down
Heart34 ± 34 of 4 0.40Down
Fat body24 ± 51 of 4 0.29Down
Ovary153 ± 84 of 4 1.80Up
Testis33 ± 14 of 4 0.40Down
Male accessory glands56 ± 53 of 4 0.70Down
Virgin spermatheca47 ± 32 of 4 0.57Down
Mated spermatheca44 ± 20 of 4 0.53Down
Adult carcass33 ± 31 of 4 0.40Down
Larval CNS106 ± 34 of 4 1.26Up
Larval Salivary gland62 ± 34 of 4 0.75Down
Larval midgut44 ± 53 of 4 0.52Down
Larval tubule75 ± 34 of 4 0.90None
Larval hindgut35 ± 33 of 4 0.42Down
Larval fat body42 ± 44 of 4 0.50Down
Larval trachea65 ± 134 of 4 0.78None
Larval carcass37 ± 32 of 4 0.44Down
S2 cells (growing)64 ± 14 of 4 0.77Down
Whole fly84 ± 24 of 4

Looking for CG30390-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime