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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG30392-RA through 18771 annotations produced 1 hits



(CG30392):

Annotation Number : CG30392
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0050392
Gbrowse : chr2R:17178418-17179683 (-) // 100.0 //
Probeset : 1634628_at
Accessions : protein= NP_611572;, nucleotide= NM_137728;
Pathway : 0005737 // cytoplasm // inferred from electronic annotation
Interpro : 0017089 // glycolipid transporter activity // inferred from electronic annotation /// 0051861 // glycolipid binding // i
FlyMine data for FBgn0050392.
VDRC has 2 RNAi stocks for FBgn0050392 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain347 ± 54 of 4 1.10Up
Head248 ± 94 of 4 0.80Down
Eye291 ± 164 of 4 0.95None
Thoracicoabdominal ganglion325 ± 84 of 4 1.10None
Salivary gland785 ± 664 of 4 2.55Up
Crop266 ± 114 of 4 0.90Down
Midgut736 ± 74 of 4 2.40Up
Tubule343 ± 134 of 4 1.10Up
Hindgut317 ± 164 of 4 1.00None
Heart189 ± 124 of 4 0.62Down
Fat body102 ± 44 of 4 0.33Down
Ovary391 ± 44 of 4 1.30Up
Testis343 ± 114 of 4 1.10None
Male accessory glands770 ± 584 of 4 2.50Up
Virgin spermatheca142 ± 234 of 4 0.46Down
Mated spermatheca146 ± 194 of 4 0.47Down
Adult carcass107 ± 44 of 4 0.30Down
Larval CNS193 ± 44 of 4 0.63Down
Larval Salivary gland551 ± 404 of 4 1.79Up
Larval midgut739 ± 494 of 4 2.40Up
Larval tubule770 ± 184 of 4 2.50Up
Larval hindgut362 ± 174 of 4 1.17None
Larval fat body161 ± 104 of 4 0.50Down
Larval trachea394 ± 394 of 4 1.28Up
Larval carcass219 ± 114 of 4 0.71Down
S2 cells (growing)170 ± 44 of 4 0.55Down
Whole fly308 ± 124 of 4

Looking for CG30392-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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