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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG30393-RA through 18771 annotations produced 1 hits


Annotation Number : CG30393
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0050393
Gbrowse : chr2R:17153867-17155084 (-) // 100.0 //
Probeset : 1631347_at
Accessions : protein= NP_726044;, nucleotide= NM_166433;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0050393.
BDGP gene expression has embryonic in situ data for CG30393: 4 pix of staining in 1 body parts.
BioGrid reports that CG30393 interacts with CG31919 .
VDRC has 2 RNAi stocks for FBgn0050393 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 00 of 4 0.00Down
Head7 00 of 4 0.10Down
Eye1 00 of 4 0.02Down
Thoracicoabdominal ganglion2 10 of 4 0.00Down
Salivary gland16 31 of 4 0.27Down
Crop4 00 of 4 0.10Down
Midgut5 10 of 4 0.10Down
Tubule3 00 of 4 0.10Down
Hindgut3 00 of 4 0.10Down
Heart3 11 of 4 0.05Down
Fat body6 10 of 4 0.11Down
Ovary2 10 of 4 0.00Down
Testis915 204 of 415.20Up
Male accessory glands4 10 of 4 0.10Down
Virgin spermatheca1 00 of 4 0.03Down
Mated spermatheca2 10 of 4 0.03Down
Adult carcass9 10 of 4 0.20Down
Larval CNS1 10 of 4 0.02Down
Larval Salivary gland2 10 of 4 0.04Down
Larval midgut2 10 of 4 0.04Down
Larval tubule0 00 of 4 0.00Down
Larval hindgut0 00 of 4 0.01Down
Larval fat body156 964 of 4 2.60None
Larval trachea7 71 of 4 0.12Down
Larval carcass2 10 of 4 0.05Down
S2 cells (growing)1 00 of 4 0.03Down
Whole fly60 24 of 4

Looking for CG30393-RA. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime