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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG30401-RB through 18771 annotations produced 1 hits



(CG30401):

Annotation Number : CG30401
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0050401
Gbrowse : chr2R:17873266-17874455 (-) // 100.0 //
Probeset : 1640422_a_at
Accessions : protein= NP_726138;, nucleotide= NM_166494;
Pathway : "0000775 // chromosome
Interpro : centromeric region // inferred from electronic annotation"
FlyMine data for FBgn0050401.
VDRC has 3 RNAi stocks for FBgn0050401 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain7 ± 20 of 4 0.90None
Head6 ± 10 of 4 0.70None
Eye4 ± 11 of 4 0.56None
Thoracicoabdominal ganglion7 ± 11 of 4 0.90None
Salivary gland8 ± 30 of 4 0.99None
Crop12 ± 11 of 4 1.50None
Midgut5 ± 20 of 4 0.60None
Tubule4 ± 10 of 4 0.50Down
Hindgut7 ± 10 of 4 0.80None
Heart2 ± 00 of 4 0.35Down
Fat body8 ± 32 of 4 0.96None
Ovary6 ± 00 of 4 0.70None
Testis54 ± 34 of 4 6.40Up
Male accessory glands4 ± 30 of 4 0.50None
Virgin spermatheca3 ± 00 of 4 0.36Down
Mated spermatheca3 ± 10 of 4 0.41Down
Adult carcass9 ± 20 of 4 1.10None
Larval CNS5 ± 10 of 4 0.63None
Larval Salivary gland7 ± 20 of 4 0.91None
Larval midgut7 ± 10 of 4 0.88None
Larval tubule6 ± 20 of 4 0.70None
Larval hindgut8 ± 11 of 4 1.02None
Larval fat body23 ± 43 of 4 2.80Up
Larval trachea4 ± 20 of 4 0.58None
Larval carcass7 ± 20 of 4 0.93None
S2 cells (growing)2 ± 00 of 4 0.30Down
Whole fly8 ± 11 of 4

Looking for CG30401-RB. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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