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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG30414-RA through 18771 annotations produced 1 hits



(CG30414):

Annotation Number : CG30414
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0050414
Gbrowse : chr2R:19271165-19272849 (-) // 100.0 //
Probeset : 1631415_at
Accessions : protein= NP_001163264; /// NP_611789;, nucleotide= NM_001169793; /// NM_137945;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity /
FlyMine data for FBgn0050414.
Homophila reports that CG30414 is a close match (5e-11) to human gene PRSS2;TRY2 (NP_002761), a gene associated with {Pancreatitis, chronic, protection against} (3).
BioGrid reports that CG30414 interacts with CG4059 .
TRiP has 1 RNAi stocks for FBgn0050414 available for purchase.
VDRC has 3 RNAi stocks for FBgn0050414 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain5 ± 01 of 4 1.10None
Head2 ± 00 of 4 0.60None
Eye3 ± 00 of 4 0.67None
Thoracicoabdominal ganglion7 ± 10 of 4 1.50None
Salivary gland2 ± 10 of 4 0.58None
Crop3 ± 10 of 4 0.70None
Midgut5 ± 20 of 4 1.10None
Tubule3 ± 00 of 4 0.80Down
Hindgut3 ± 10 of 4 0.60None
Heart0 ± 00 of 4 0.11None
Fat body2 ± 10 of 4 0.52None
Ovary4 ± 01 of 4 0.90None
Testis6 ± 10 of 4 1.30None
Male accessory glands3 ± 10 of 4 0.70None
Virgin spermatheca7 ± 00 of 4 1.61None
Mated spermatheca4 ± 10 of 4 0.88None
Adult carcass11 ± 30 of 4 2.30None
Larval CNS1 ± 10 of 4 0.35None
Larval Salivary gland5 ± 20 of 4 1.17None
Larval midgut5 ± 20 of 4 1.12None
Larval tubule6 ± 20 of 4 1.20None
Larval hindgut7 ± 10 of 4 1.57None
Larval fat body15 ± 34 of 4 3.20None
Larval trachea2 ± 10 of 4 0.52None
Larval carcass8 ± 00 of 4 1.65None
S2 cells (growing)8 ± 00 of 4 1.71None
Whole fly4 ± 20 of 4

Looking for CG30414-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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